MPL-MPL384_11_H24
|
CGGTCCGGATTCCCGGGTCGACCCACGCGTCCGGGAAACCCGCACGCACACGCTGACCCG
GGTCAACCTGGAGAGCCCCGGGCCGGAGCGCGTATGGCGCGCTTCCTGGGGAGAGTTCCA
GGCGCGCGTCCCGGAGCGCGCACCCCTCCCGCCCCCGGCTCCCCCGCAATTCCAGGCGCG
TATGCTCGAGAGCGGGCCCCTTCCCGAAGCCCACCAGGGGGGGAGAAGAGTGCCCTCCCC
CAAAACACACCTAGGTGAGGCATTGGCACCCTTATCCACGGCGTACCAAGGCCTGGGCAC
TCCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGTCCGGATTCCCGGGTCGACCCACGCGTCCGGGAAACCCGCACGCACACGCTGACCCG
GGTCAACCTGGAGAGCCCCGGGCCGGAGCGCGTATGGCGCGCTTCCTGGGGAGAGTTCCA
GGCGCGCGTCCCGGAGCGCGCACCCCTCCCGCCCCCGGCTCCCCCGCAATTCCAGGCGCG
TATGCTCGAGAGCGGGCCCCTTCCCGAAGCCCACCAGGGGGGGAGAAGAGTGCCCTCCCC
CAAAACACACCTAGGTGAGGCATTGGCACCCTTATCCACGGCGTACCAAGGCCTGGGCAC
TCCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
153-292, AL514778 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone
(emb|AL514778.3|), blast E-value=1e-23, identity=84.29% |
|
170-292, 17000600087466 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence
(gb|CN391985.1|), blast E-value=1e-20, identity=84.55% |
|
153-296, LB02517.CR_N22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV872421.1|),
blast E-value=3e-33, identity=87.5% |
|
153-296, LB02522.CR_F16 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873845.1|),
blast E-value=3e-33, identity=87.5% |
|
234-296, LB02622.CR_H15 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV882273.1|),
blast E-value=3e-21, identity=96.83% |
|
153-296, LB0273.CR_L03 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887901.1|),
blast E-value=3e-33, identity=87.5% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
153-292, AL514778 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone
(emb|AL514778.3|), blast E-value=1e-23, identity=84.29% |
|
170-292, 17000600087466 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence
(gb|CN391985.1|), blast E-value=1e-20, identity=84.55% |
|
153-296, LB02517.CR_N22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV872421.1|),
blast E-value=3e-33, identity=87.5% |
|
153-296, LB02522.CR_F16 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873845.1|),
blast E-value=3e-33, identity=87.5% |
|
234-296, LB02622.CR_H15 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV882273.1|),
blast E-value=3e-21, identity=96.83% |
|
153-296, LB0273.CR_L03 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887901.1|),
blast E-value=3e-33, identity=87.5% |
|
34-305, gnl|bosTau2|chr25 (32791579-32791311) |
|
34-305, gnl|canFam2|chr6 (11707340-11707062) |
|
34-305, gnl|hg17|chr7 (100400727-100401005) |
|
34-305, gnl|Hg17|chr7 (100401005-100400734) |
|
34-305, gnl|mm7|chr5 (136002739-136002461) |
|
34-305, gnl|Mm7|chr5 (136002459-136002730) |
|
34-305, gnl|monDom2|scaffold_66 (3051284-3051547) |
|
34-305, gnl|oryCun1|scaffold_186224 (4800-4522) |
|
34-305, gnl|panTro1|chr6 (102167509-102167787) |
|
34-305, gnl|rheMac2|chr3 (48448123-48448401) |
|
34-305, gnl|rn3|chr12 (20894462-20894184) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
34-305, gnl|bosTau2|chr25 (32791579-32791311) |
|
34-305, gnl|canFam2|chr6 (11707340-11707062) |
|
34-305, gnl|hg17|chr7 (100400727-100401005) |
|
34-305, gnl|Hg17|chr7 (100401005-100400734) |
|
34-305, gnl|mm7|chr5 (136002739-136002461) |
|
34-305, gnl|Mm7|chr5 (136002459-136002730) |
|
34-305, gnl|monDom2|scaffold_66 (3051284-3051547) |
|
34-305, gnl|oryCun1|scaffold_186224 (4800-4522) |
|
34-305, gnl|panTro1|chr6 (102167509-102167787) |
|
34-305, gnl|rheMac2|chr3 (48448123-48448401) |
|
34-305, gnl|rn3|chr12 (20894462-20894184) |
