Non-Coding RNA Search

MPL-MPL384_11_K09

Sequence:


               
               GAATTCCCACTGTCGACCCACGCGTCCGTGGGTCCCGATGCTGTCAGCTTGGCCTCTCCA
CTGCAAAGTTCTACGTCATCTTCTAATGTTTCAGCAGTTACCGATGACTGCTGCCTAAAG
TCATTATTTCACTAGGGATTGTAAAATGGTGATTTCTCTTTTTTTTAAAGTTTGATACAT
TTAATACAGAATTTAGTAGGCCAGACTACCAAATAGACTTTCTGGGAATAATTAGTTACA
TTTTATATATTCAAGAGACAATGGAAACTTCCTTTACCTCAGCTCTGAATTCTGAAAGAG
TTTTTGTGGTACTTAAAAAATATAATCCACCTGGAGTTCCTGCAtggctcagcgggttaa
ggacctggccttgtcactgcagtggcttggattgttgctatggcacaagtttgattccct
ggcctggaaacttccacatgctgcaggcatggCCCCCCCAAAAAAATAAGTATATGTGTG
TGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCCCACTGTCGACCCACGCGTCCGTGGGTCCCGATGCTGTCAGCTTGGCCTCTCCA
CTGCAAAGTTCTACGTCATCTTCTAATGTTTCAGCAGTTACCGATGACTGCTGCCTAAAG
TCATTATTTCACTAGGGATTGTAAAATGGTGATTTCTCTTTTTTTTAAAGTTTGATACAT
TTAATACAGAATTTAGTAGGCCAGACTACCAAATAGACTTTCTGGGAATAATTAGTTACA
TTTTATATATTCAAGAGACAATGGAAACTTCCTTTACCTCAGCTCTGAATTCTGAAAGAG
TTTTTGTGGTACTTAAAAAATATAATCCACCTGGAGTTCCTGCAtggctcagcgggttaa
ggacctggccttgtcactgcagtggcttggattgttgctatggcacaagtttgattccct
ggcctggaaacttccacatgctgcaggcatggCCCCCCCAAAAAAATAAGTATATGTGTG
TGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               79-193, + strand, RNAz p=0.722962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-193, + strand, RNAz p=0.722962

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               39-328, gnl|bosTau2|chr22 (4940907-4940623)
               

               
               39-328, gnl|canFam2|chr23 (6754092-6753551)
               

               
               39-328, gnl|hg17|chr3 (33102791-33103359)
               

               
               39-328, gnl|Hg17|chr3 (33103049-33102790)
               

               
               39-328, gnl|panTro1|chr2 (34120260-34120828)
               

               
               39-328, gnl|rheMac2|chr2 (175573019-175573574)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-328, gnl|bosTau2|chr22 (4940907-4940623)
               

               
               39-328, gnl|canFam2|chr23 (6754092-6753551)
               

               
               39-328, gnl|hg17|chr3 (33102791-33103359)
               

               
               39-328, gnl|Hg17|chr3 (33103049-33102790)
               

               
               39-328, gnl|panTro1|chr2 (34120260-34120828)
               

               
               39-328, gnl|rheMac2|chr2 (175573019-175573574)

	39-328, gnl\|bosTau2\|chr22 (4940907-4940623)
	39-328, gnl\|canFam2\|chr23 (6754092-6753551)
	39-328, gnl\|hg17\|chr3 (33102791-33103359)
	39-328, gnl\|Hg17\|chr3 (33103049-33102790)
	39-328, gnl\|panTro1\|chr2 (34120260-34120828)
	39-328, gnl\|rheMac2\|chr2 (175573019-175573574)