Non-Coding RNA Search

MPL-MPL384_11_P05

Sequence:


               
               TCCCGGGTCGACCCACGCGTCCGTATGTTACAGTTTATCTGGTACTTCATTTTTCTTAAC
TAAAATTACTTTTTACTTTAAGCTTGAATAAAATTTTCATTGGTAACTGTATATAATTAA
GTGGCAACTTCTCTTTACCTCAGTACAGTTAAGTCCATGCGCATTTTAAGTGACTCATGT
ATACCCTGAAGCCATTAATGCACCCCAATCTGCAGAGTAACGTCACTATCAAAATGTGGG
CATAGAAACTCCACAGCCTTTTATACAAATTTGGTTACAGTGTGCTGTGGTACATTTGTA
CCATTCACTGAGACTTGTGCCCACTCCGGGGCAGTATGGCACTCAGAGTCTTCTCTACTC
GACCCATCCACCCCTAGATCTGAGTTTTCAGAGTGCTTCTNAAGTACAGTTATAAACACT
TGAAAAAAGTGGAGTAAAAGTGAGGCACATTTTACAAGAACATAACTCCATTAAAACGGA
GTGATAACTATGCAAAGGTTTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGGTCGACCCACGCGTCCGTATGTTACAGTTTATCTGGTACTTCATTTTTCTTAAC
TAAAATTACTTTTTACTTTAAGCTTGAATAAAATTTTCATTGGTAACTGTATATAATTAA
GTGGCAACTTCTCTTTACCTCAGTACAGTTAAGTCCATGCGCATTTTAAGTGACTCATGT
ATACCCTGAAGCCATTAATGCACCCCAATCTGCAGAGTAACGTCACTATCAAAATGTGGG
CATAGAAACTCCACAGCCTTTTATACAAATTTGGTTACAGTGTGCTGTGGTACATTTGTA
CCATTCACTGAGACTTGTGCCCACTCCGGGGCAGTATGGCACTCAGAGTCTTCTCTACTC
GACCCATCCACCCCTAGATCTGAGTTTTCAGAGTGCTTCTNAAGTACAGTTATAAACACT
TGAAAAAAGTGGAGTAAAAGTGAGGCACATTTTACAAGAACATAACTCCATTAAAACGGA
GTGATAACTATGCAAAGGTTTCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               219-414, + strand, RNAz p=0.99913
               

               
               223-338, - strand, RNAz p=0.978477

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-414, + strand, RNAz p=0.99913
               

               
               223-338, - strand, RNAz p=0.978477

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               323-415, + strand, RNAmicro p=0.99674

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               323-415, + strand, RNAmicro p=0.99674

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               232-411, DB119264 THYMU2 Homo sapiens cDNA clone THYMU2026854 5', mRNA 
(dbj|DB119264.1|), blast E-value=1e-36, identity=86.67% 
               

               
               232-411, DB490633 RIKEN full-length enriched human cDNA library, 
(dbj|DB490633.1|), blast E-value=1e-36, identity=86.67% 
               

               
               223-411, AJ818102 KN206 Bos sp. cDNA clone C0006011c20, mRNA sequence 
(emb|AJ818102.1|), blast E-value=3e-40, identity=86.77% 
               

               
               232-411, 603251543F1 NIH_MGC_96 Homo sapiens cDNA clone IMAGE (gb|BI598183.1|), 
blast E-value=5e-39, identity=87.22% 
               

               
               223-411, LB0271.CR_N22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887357.1|), 
blast E-value=7e-38, identity=86.24% 
               

               
               223-411, 000404BHTA004199HT BHTA Bos taurus cDNA, mRNA sequence 
(gb|DY107369.1|), blast E-value=7e-38, identity=86.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               232-411, DB119264 THYMU2 Homo sapiens cDNA clone THYMU2026854 5', mRNA 
(dbj|DB119264.1|), blast E-value=1e-36, identity=86.67% 
               

               
               232-411, DB490633 RIKEN full-length enriched human cDNA library, 
(dbj|DB490633.1|), blast E-value=1e-36, identity=86.67% 
               

               
               223-411, AJ818102 KN206 Bos sp. cDNA clone C0006011c20, mRNA sequence 
(emb|AJ818102.1|), blast E-value=3e-40, identity=86.77% 
               

               
               232-411, 603251543F1 NIH_MGC_96 Homo sapiens cDNA clone IMAGE (gb|BI598183.1|), 
blast E-value=5e-39, identity=87.22% 
               

               
               223-411, LB0271.CR_N22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887357.1|), 
blast E-value=7e-38, identity=86.24% 
               

               
               223-411, 000404BHTA004199HT BHTA Bos taurus cDNA, mRNA sequence 
(gb|DY107369.1|), blast E-value=7e-38, identity=86.24%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025160, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025160, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               24-503, gnl|bosTau2|chr16 (13841685-13842162)
               

               
               24-503, gnl|canFam2|chr7 (42972983-42972674)
               

               
               24-503, gnl|dasNov1|scaffold_262178 (378-49)
               

               
               24-503, gnl|echTel1|scaffold_286127 (42027-42253)
               

               
               24-503, gnl|hg17|chr1 (220881879-220882211)
               

               
               24-503, gnl|Hg17|chr1 (220882368-220881894)
               

               
               24-503, gnl|loxAfr1|scaffold_23844 (28348-28033)
               

               
               24-503, gnl|mm7|chr1 (181155145-181155464)
               

               
               24-503, gnl|Mm7|chr1 (181155610-181155160)
               

               
               24-503, gnl|monDom2|scaffold_13 (31612613-31612966)
               

               
               24-503, gnl|oryCun1|scaffold_206232 (112378-112058)
               

               
               24-503, gnl|panTro1|chr1 (204690135-204690467)
               

               
               24-503, gnl|rheMac2|chr1 (146093145-146092813)
               

               
               24-503, gnl|rn3|chr13 (97135411-97135730)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-503, gnl|bosTau2|chr16 (13841685-13842162)
               

               
               24-503, gnl|canFam2|chr7 (42972983-42972674)
               

               
               24-503, gnl|dasNov1|scaffold_262178 (378-49)
               

               
               24-503, gnl|echTel1|scaffold_286127 (42027-42253)
               

               
               24-503, gnl|hg17|chr1 (220881879-220882211)
               

               
               24-503, gnl|Hg17|chr1 (220882368-220881894)
               

               
               24-503, gnl|loxAfr1|scaffold_23844 (28348-28033)
               

               
               24-503, gnl|mm7|chr1 (181155145-181155464)
               

               
               24-503, gnl|Mm7|chr1 (181155610-181155160)
               

               
               24-503, gnl|monDom2|scaffold_13 (31612613-31612966)
               

               
               24-503, gnl|oryCun1|scaffold_206232 (112378-112058)
               

               
               24-503, gnl|panTro1|chr1 (204690135-204690467)
               

               
               24-503, gnl|rheMac2|chr1 (146093145-146092813)
               

               
               24-503, gnl|rn3|chr13 (97135411-97135730)

	219-414, + strand, RNAz p=0.99913
	223-338, - strand, RNAz p=0.978477

	232-411, DB119264 THYMU2 Homo sapiens cDNA clone THYMU2026854 5', mRNA (dbj\|DB119264.1\|), blast E-value=1e-36, identity=86.67%
	232-411, DB490633 RIKEN full-length enriched human cDNA library, (dbj\|DB490633.1\|), blast E-value=1e-36, identity=86.67%
	223-411, AJ818102 KN206 Bos sp. cDNA clone C0006011c20, mRNA sequence (emb\|AJ818102.1\|), blast E-value=3e-40, identity=86.77%
	232-411, 603251543F1 NIH_MGC_96 Homo sapiens cDNA clone IMAGE (gb\|BI598183.1\|), blast E-value=5e-39, identity=87.22%
	223-411, LB0271.CR_N22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV887357.1\|), blast E-value=7e-38, identity=86.24%
	223-411, 000404BHTA004199HT BHTA Bos taurus cDNA, mRNA sequence (gb\|DY107369.1\|), blast E-value=7e-38, identity=86.24%

	24-503, gnl\|bosTau2\|chr16 (13841685-13842162)
	24-503, gnl\|canFam2\|chr7 (42972983-42972674)
	24-503, gnl\|dasNov1\|scaffold_262178 (378-49)
	24-503, gnl\|echTel1\|scaffold_286127 (42027-42253)
	24-503, gnl\|hg17\|chr1 (220881879-220882211)
	24-503, gnl\|Hg17\|chr1 (220882368-220881894)
	24-503, gnl\|loxAfr1\|scaffold_23844 (28348-28033)
	24-503, gnl\|mm7\|chr1 (181155145-181155464)
	24-503, gnl\|Mm7\|chr1 (181155610-181155160)
	24-503, gnl\|monDom2\|scaffold_13 (31612613-31612966)
	24-503, gnl\|oryCun1\|scaffold_206232 (112378-112058)
	24-503, gnl\|panTro1\|chr1 (204690135-204690467)
	24-503, gnl\|rheMac2\|chr1 (146093145-146092813)
	24-503, gnl\|rn3\|chr13 (97135411-97135730)