Non-Coding RNA Search

MPL-MPL384_3_M07

Sequence:


               
               GTCCGGTGAAGGGCAATGCAGAGGCTTCCTTCCCGGCCTCATCGGCTGAGACCAAACCCT
CCTTGGCCCCCGTGTCCCCTCCAGCACCTCCCGTCACCGCGGCCACCGTTTCCTCTCTGG
AGGGGCCCGCTCCCAACCCAGCCGCCGTGCCCTCCACCCCCACCCTGCTCGCCTGGAAGC
AGCTGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCGGTGAAGGGCAATGCAGAGGCTTCCTTCCCGGCCTCATCGGCTGAGACCAAACCCT
CCTTGGCCCCCGTGTCCCCTCCAGCACCTCCCGTCACCGCGGCCACCGTTTCCTCTCTGG
AGGGGCCCGCTCCCAACCCAGCCGCCGTGCCCTCCACCCCCACCCTGCTCGCCTGGAAGC
AGCTGGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               45-164, + strand, RNAz p=0.710588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-164, + strand, RNAz p=0.710588

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               6-189, gnl|bosTau2|chr16 (22618228-22618411)
               

               
               6-189, gnl|canFam2|chr2 (88193629-88193373)
               

               
               6-189, gnl|danRer3|chr23 (40617830-40618080)
               

               
               6-189, gnl|dasNov1|scaffold_137762 (4443-4699)
               

               
               6-189, gnl|echTel1|scaffold_298320 (3905-4159)
               

               
               6-189, gnl|fr1|chrUn (147708163-147708404)
               

               
               6-189, gnl|galGal2|chr21 (3699221-3699477)
               

               
               6-189, gnl|hg17|chr1 (10642119-10642375)
               

               
               6-189, gnl|Hg17|chr1 (10642434-10642251)
               

               
               6-189, gnl|loxAfr1|scaffold_30434 (13592-13337)
               

               
               6-189, gnl|mm7|chr4 (147934145-147933889)
               

               
               6-189, gnl|Mm7|chr4 (147933828-147934011)
               

               
               6-189, gnl|monDom2|scaffold_177 (2403-2144)
               

               
               6-189, gnl|oryCun1|scaffold_201272 (54246-53990)
               

               
               6-189, gnl|panTro1|chr1 (10839951-10840207)
               

               
               6-189, gnl|rheMac2|chr1 (13739840-13740096)
               

               
               6-189, gnl|rn3|chr5 (166032159-166031903)
               

               
               6-189, gnl|tetNig1|chr9 (2278165-2278406)
               

               
               6-189, gnl|xenTro1|scaffold_522 (227129-227376)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-189, gnl|bosTau2|chr16 (22618228-22618411)
               

               
               6-189, gnl|canFam2|chr2 (88193629-88193373)
               

               
               6-189, gnl|danRer3|chr23 (40617830-40618080)
               

               
               6-189, gnl|dasNov1|scaffold_137762 (4443-4699)
               

               
               6-189, gnl|echTel1|scaffold_298320 (3905-4159)
               

               
               6-189, gnl|fr1|chrUn (147708163-147708404)
               

               
               6-189, gnl|galGal2|chr21 (3699221-3699477)
               

               
               6-189, gnl|hg17|chr1 (10642119-10642375)
               

               
               6-189, gnl|Hg17|chr1 (10642434-10642251)
               

               
               6-189, gnl|loxAfr1|scaffold_30434 (13592-13337)
               

               
               6-189, gnl|mm7|chr4 (147934145-147933889)
               

               
               6-189, gnl|Mm7|chr4 (147933828-147934011)
               

               
               6-189, gnl|monDom2|scaffold_177 (2403-2144)
               

               
               6-189, gnl|oryCun1|scaffold_201272 (54246-53990)
               

               
               6-189, gnl|panTro1|chr1 (10839951-10840207)
               

               
               6-189, gnl|rheMac2|chr1 (13739840-13740096)
               

               
               6-189, gnl|rn3|chr5 (166032159-166031903)
               

               
               6-189, gnl|tetNig1|chr9 (2278165-2278406)
               

               
               6-189, gnl|xenTro1|scaffold_522 (227129-227376)

	6-189, gnl\|bosTau2\|chr16 (22618228-22618411)
	6-189, gnl\|canFam2\|chr2 (88193629-88193373)
	6-189, gnl\|danRer3\|chr23 (40617830-40618080)
	6-189, gnl\|dasNov1\|scaffold_137762 (4443-4699)
	6-189, gnl\|echTel1\|scaffold_298320 (3905-4159)
	6-189, gnl\|fr1\|chrUn (147708163-147708404)
	6-189, gnl\|galGal2\|chr21 (3699221-3699477)
	6-189, gnl\|hg17\|chr1 (10642119-10642375)
	6-189, gnl\|Hg17\|chr1 (10642434-10642251)
	6-189, gnl\|loxAfr1\|scaffold_30434 (13592-13337)
	6-189, gnl\|mm7\|chr4 (147934145-147933889)
	6-189, gnl\|Mm7\|chr4 (147933828-147934011)
	6-189, gnl\|monDom2\|scaffold_177 (2403-2144)
	6-189, gnl\|oryCun1\|scaffold_201272 (54246-53990)
	6-189, gnl\|panTro1\|chr1 (10839951-10840207)
	6-189, gnl\|rheMac2\|chr1 (13739840-13740096)
	6-189, gnl\|rn3\|chr5 (166032159-166031903)
	6-189, gnl\|tetNig1\|chr9 (2278165-2278406)
	6-189, gnl\|xenTro1\|scaffold_522 (227129-227376)