Non-Coding RNA Search

Mixc-0026b18

Sequence:


               
               GGGAGTGGCCAGCTGGTGCTGCCCCCGAGAGACAGGCTGAGCTGTCCTGATTGATGGTTA
AAAAAAAATTCTAACACCCACAGGCCCTGAGAAGGTGGATAACTGTGATTTTTTTTCCTT
TCACAGTATGCATTAGAAACAAAAGCCCGCTTGCTCGCTTGCTGGAACACAGGGGCCTTT
TAAATTGAGCGTGCGCACTGCATGGGAAATAGCGGCCCTGGAGGATGTTAGACTTGCTCC
CTCTCCAAGACAGCAGCAGCCTGCACCCGCCCGCGTGTGCGGCGGCCTCTGCCTCACCCC
TCCCGGGCCCAGCCTCGGACCCAGGCGCTGCAGACAGGGGAGGGGCACACCCCAGCGCGG
GGCCCACCCCCTCAGCGCTAGGCTATTCTGTAGCTGGTCAGCCCTCCCCGCCCCCCTTGT
GGGACATAAGTGGGCAGGAGCTTGGGTCTCTCTTGTCCCTCCTGGGTCCCACCCCTGGCC
CTGGGGAACCCCCCGGCAAGAGCTGGGGCGCTTGCCCCACAGGGGAGCTGGGCTGGGTCC
GCTGTGGGAGCTGCCCCTTTTGCCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTGGCCAGCTGGTGCTGCCCCCGAGAGACAGGCTGAGCTGTCCTGATTGATGGTTA
AAAAAAAATTCTAACACCCACAGGCCCTGAGAAGGTGGATAACTGTGATTTTTTTTCCTT
TCACAGTATGCATTAGAAACAAAAGCCCGCTTGCTCGCTTGCTGGAACACAGGGGCCTTT
TAAATTGAGCGTGCGCACTGCATGGGAAATAGCGGCCCTGGAGGATGTTAGACTTGCTCC
CTCTCCAAGACAGCAGCAGCCTGCACCCGCCCGCGTGTGCGGCGGCCTCTGCCTCACCCC
TCCCGGGCCCAGCCTCGGACCCAGGCGCTGCAGACAGGGGAGGGGCACACCCCAGCGCGG
GGCCCACCCCCTCAGCGCTAGGCTATTCTGTAGCTGGTCAGCCCTCCCCGCCCCCCTTGT
GGGACATAAGTGGGCAGGAGCTTGGGTCTCTCTTGTCCCTCCTGGGTCCCACCCCTGGCC
CTGGGGAACCCCCCGGCAAGAGCTGGGGCGCTTGCCCCACAGGGGAGCTGGGCTGGGTCC
GCTGTGGGAGCTGCCCCTTTTGCCTCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               62-180, - strand, RNAz p=0.821858
               

               
               298-441, - strand, RNAz p=0.999692

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-180, - strand, RNAz p=0.821858
               

               
               298-441, - strand, RNAz p=0.999692

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-510, gnl|bosTau2|chr11 (73518380-73517883)
               

               
               24-510, gnl|Hg17|chr9 (121625266-121625767)
               

               
               24-510, gnl|Mm7|chr2 (35736325-35736825)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-510, gnl|bosTau2|chr11 (73518380-73517883)
               

               
               24-510, gnl|Hg17|chr9 (121625266-121625767)
               

               
               24-510, gnl|Mm7|chr2 (35736325-35736825)

	62-180, - strand, RNAz p=0.821858
	298-441, - strand, RNAz p=0.999692

	24-510, gnl\|bosTau2\|chr11 (73518380-73517883)
	24-510, gnl\|Hg17\|chr9 (121625266-121625767)
	24-510, gnl\|Mm7\|chr2 (35736325-35736825)