Non-Coding RNA Search

Mixc-0026o11

Sequence:


               
               CGCACACACACATACACACACATTCCCTTGGAGCAGAATCGGACTTCTAAAGGGGGCTGG
CTGAGAGGGAAAAACAGGAGACTATGGTGCCCCCACACCCCAATTCCCAGCCAGGCGCAG
CGAAGCTAAAAGAAGGCCCTGGGGAGTGGAGAGAAGTCACTGACCCCTTCTATCAGCCAT
CTGTGAGCTCCCGCCTGACCTAGCTAGCGCAAAGTGGAGGATAAAGGAGGTCCAGACAGA
TGGCACAGCGCTTTGGGAAGGAAGGCTCTGTAGGAATGCGAGGGCCGAGGCGAGGCCCCC
CTTTGGGGTGCGTTTTGTTATCTCCTCAGTTCTCAGCCCCCCGCGTTTTGCAGCCACTCG
CAATCTATGGCTGAAAGGTGGGCCAAAAAACAGTCGGGGGAGAAGACCCTACCCTCTGCC
ACTTATCTCTCTCATTTGAAAGTCAGAGCACCCCACTGCAAGTAAAGTGCGTGTGTGTGC
GGAGGGGGCGGGAGACTGGCACAACCGAATCTAAAAATACTCGATAAAAATGCTAATCCC
GAAGGCAAAGAGAGAACGAAGAAGGAATCTGTCAATCACGAGGCTCCCGCTCCTCACCCA
CAGACCCAGCTGTACGGACTGCATTCCTGCCGAAGAGGAAAGAAGTGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACACACACATACACACACATTCCCTTGGAGCAGAATCGGACTTCTAAAGGGGGCTGG
CTGAGAGGGAAAAACAGGAGACTATGGTGCCCCCACACCCCAATTCCCAGCCAGGCGCAG
CGAAGCTAAAAGAAGGCCCTGGGGAGTGGAGAGAAGTCACTGACCCCTTCTATCAGCCAT
CTGTGAGCTCCCGCCTGACCTAGCTAGCGCAAAGTGGAGGATAAAGGAGGTCCAGACAGA
TGGCACAGCGCTTTGGGAAGGAAGGCTCTGTAGGAATGCGAGGGCCGAGGCGAGGCCCCC
CTTTGGGGTGCGTTTTGTTATCTCCTCAGTTCTCAGCCCCCCGCGTTTTGCAGCCACTCG
CAATCTATGGCTGAAAGGTGGGCCAAAAAACAGTCGGGGGAGAAGACCCTACCCTCTGCC
ACTTATCTCTCTCATTTGAAAGTCAGAGCACCCCACTGCAAGTAAAGTGCGTGTGTGTGC
GGAGGGGGCGGGAGACTGGCACAACCGAATCTAAAAATACTCGATAAAAATGCTAATCCC
GAAGGCAAAGAGAGAACGAAGAAGGAATCTGTCAATCACGAGGCTCCCGCTCCTCACCCA
CAGACCCAGCTGTACGGACTGCATTCCTGCCGAAGAGGAAAGAAGTGGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               133-330, - strand, RNAz p=0.977742
               

               
               396-501, + strand, RNAz p=0.911619

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-330, - strand, RNAz p=0.977742
               

               
               396-501, + strand, RNAz p=0.911619

Similar Transcript(s): 3 entry(ies)

More info

Similar Transcript(s): 3 entry(ies)

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               148-259, BP499856 Rattus norvegicus insulinoma RINm5F Rattus norvegicus cDNA 
(dbj|BP499856.1|), blast E-value=2e-19, identity=86.61% 
               

               
               148-297, UI-R-C1-jw-c-10-0-UI.r1 UI-R-C1 Rattus norvegicus cDNA clone 
(gb|BF550831.1|), blast E-value=2e-20, identity=84.67% 
               

               
               133-323, LIB38533_006_E02_T7_1 LIB38533 Canis familiaris cDNA clone 
(gb|DN380812.1|), blast E-value=0, identity=91.62%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               148-259, BP499856 Rattus norvegicus insulinoma RINm5F Rattus norvegicus cDNA 
(dbj|BP499856.1|), blast E-value=2e-19, identity=86.61% 
               

               
               148-297, UI-R-C1-jw-c-10-0-UI.r1 UI-R-C1 Rattus norvegicus cDNA clone 
(gb|BF550831.1|), blast E-value=2e-20, identity=84.67% 
               

               
               133-323, LIB38533_006_E02_T7_1 LIB38533 Canis familiaris cDNA clone 
(gb|DN380812.1|), blast E-value=0, identity=91.62%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-651, gnl|bosTau2|chr10 (6440600-6441163)
               

               
               94-651, gnl|Hg17|chr15 (65146768-65146205)
               

               
               94-651, gnl|Mm7|chr9 (63784972-63785516)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-651, gnl|bosTau2|chr10 (6440600-6441163)
               

               
               94-651, gnl|Hg17|chr15 (65146768-65146205)
               

               
               94-651, gnl|Mm7|chr9 (63784972-63785516)

	133-330, - strand, RNAz p=0.977742
	396-501, + strand, RNAz p=0.911619

	148-259, BP499856 Rattus norvegicus insulinoma RINm5F Rattus norvegicus cDNA (dbj\|BP499856.1\|), blast E-value=2e-19, identity=86.61%
	148-297, UI-R-C1-jw-c-10-0-UI.r1 UI-R-C1 Rattus norvegicus cDNA clone (gb\|BF550831.1\|), blast E-value=2e-20, identity=84.67%
	133-323, LIB38533_006_E02_T7_1 LIB38533 Canis familiaris cDNA clone (gb\|DN380812.1\|), blast E-value=0, identity=91.62%

	94-651, gnl\|bosTau2\|chr10 (6440600-6441163)
	94-651, gnl\|Hg17\|chr15 (65146768-65146205)
	94-651, gnl\|Mm7\|chr9 (63784972-63785516)