Non-Coding RNA Search

Mixc-0027c24

Sequence:


               
               CCCACCACGCTTTCACACTGACCTCCACCCCCTCCCCCTCCCACAGTGCTCACGGCCACT
GCCGGCCTGTGACTCCCACTCCTCCACTGCTTTTGTTCAGGGTGCCCTGCTGAAGCGTGC
AGACGGCACAATCCCCAGGGCTTCATGCTTCCATACGCAATGGCCCGGCCCAGAGGCAAG
GGTAGGGGTGGGGAGCCTCCCCTCTCTGCTTCGCCTCCTCCCTCCATACACGCACCCTCC
CTCCCATCCCCCCCTTCCGCCCACCATCACCCGTGCCCGAGAGAAGGGCTGGAAAGGCGC
TGAGAGCTCCTCTCTGGAAAGCACAGATAAAGCTGGTGCAGGGACCTCTGGAGCCTGTGC
AACCTCGGTGGCAAATGTCCGATCTGCCAGCCCATGGGACGAATGGTATCACCAATGATG
GCACCCCGAGGACAAGAGGCACACCTGGTGCCCAGCCAAGTAATTTATGCCTTAACTTTG
TTTTGGTAGCAATGAAAGGGGGATACATCAAAGGCATCTGTCCCCTGTCACACAGTACGA
CCTTTACTGTCGTAAATATTTTTAAGAAATTATATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCACGCTTTCACACTGACCTCCACCCCCTCCCCCTCCCACAGTGCTCACGGCCACT
GCCGGCCTGTGACTCCCACTCCTCCACTGCTTTTGTTCAGGGTGCCCTGCTGAAGCGTGC
AGACGGCACAATCCCCAGGGCTTCATGCTTCCATACGCAATGGCCCGGCCCAGAGGCAAG
GGTAGGGGTGGGGAGCCTCCCCTCTCTGCTTCGCCTCCTCCCTCCATACACGCACCCTCC
CTCCCATCCCCCCCTTCCGCCCACCATCACCCGTGCCCGAGAGAAGGGCTGGAAAGGCGC
TGAGAGCTCCTCTCTGGAAAGCACAGATAAAGCTGGTGCAGGGACCTCTGGAGCCTGTGC
AACCTCGGTGGCAAATGTCCGATCTGCCAGCCCATGGGACGAATGGTATCACCAATGATG
GCACCCCGAGGACAAGAGGCACACCTGGTGCCCAGCCAAGTAATTTATGCCTTAACTTTG
TTTTGGTAGCAATGAAAGGGGGATACATCAAAGGCATCTGTCCCCTGTCACACAGTACGA
CCTTTACTGTCGTAAATATTTTTAAGAAATTATATAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               267-378, - strand, RNAz p=0.669216
               

               
               419-513, + strand, RNAz p=0.521836

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-378, - strand, RNAz p=0.669216
               

               
               419-513, + strand, RNAz p=0.521836

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001004439, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001004439, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               229-580, gnl|bosTau2|chr10 (9825409-9825762)
               

               
               229-580, gnl|Hg17|chr15 (66381451-66381114)
               

               
               229-580, gnl|Mm7|chr9 (62811969-62812294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-580, gnl|bosTau2|chr10 (9825409-9825762)
               

               
               229-580, gnl|Hg17|chr15 (66381451-66381114)
               

               
               229-580, gnl|Mm7|chr9 (62811969-62812294)

	267-378, - strand, RNAz p=0.669216
	419-513, + strand, RNAz p=0.521836

	229-580, gnl\|bosTau2\|chr10 (9825409-9825762)
	229-580, gnl\|Hg17\|chr15 (66381451-66381114)
	229-580, gnl\|Mm7\|chr9 (62811969-62812294)