Non-Coding RNA Search

Mixc-0027d09

Sequence:


               
               CCCACCATGTAGGACAAACTGATGGTCAGGATCGACAGGGCAACAAGGTTCCAGGGATGC
TTTCGCCGGAAGTCCCCGCAACAGCTGAGGACAATGAGGGAGATGAAGAAGATGGCGTAG
GAGACATAGTAGGTCCAGACATGGGCCCGGACAAAGCCCTTCACCTCCCTGACAAAACCA
AAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCATGTAGGACAAACTGATGGTCAGGATCGACAGGGCAACAAGGTTCCAGGGATGC
TTTCGCCGGAAGTCCCCGCAACAGCTGAGGACAATGAGGGAGATGAAGAAGATGGCGTAG
GAGACATAGTAGGTCCAGACATGGGCCCGGACAAAGCCCTTCACCTCCCTGACAAAACCA
AAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               58-176, - strand, RNAz p=0.865968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-176, - strand, RNAz p=0.865968

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               36-176, gnl|bosTau2|chr14 (228701-228841)
               

               
               36-176, gnl|canFam2|chr13 (40543436-40543657)
               

               
               36-176, gnl|danRer3|chr25 (2692946-2692731)
               

               
               36-176, gnl|dasNov1|scaffold_76285 (4022-4244)
               

               
               36-176, gnl|echTel1|scaffold_285934 (42624-42825)
               

               
               36-176, gnl|fr1|chrUn (65833976-65834195)
               

               
               36-176, gnl|hg17|chr8 (145138023-145138245)
               

               
               36-176, gnl|Hg17|chr8 (145138234-145138094)
               

               
               36-176, gnl|mm7|chr15 (76330990-76331212)
               

               
               36-176, gnl|Mm7|chr15 (76331201-76331061)
               

               
               36-176, gnl|monDom2|scaffold_79 (2061044-2061270)
               

               
               36-176, gnl|oryCun1|scaffold_138473 (38-260)
               

               
               36-176, gnl|panTro1|chr7 (148416306-148416528)
               

               
               36-176, gnl|rn3|chr7 (114313095-114313319)
               

               
               36-176, gnl|tetNig1|chr8 (6706540-6706323)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-176, gnl|bosTau2|chr14 (228701-228841)
               

               
               36-176, gnl|canFam2|chr13 (40543436-40543657)
               

               
               36-176, gnl|danRer3|chr25 (2692946-2692731)
               

               
               36-176, gnl|dasNov1|scaffold_76285 (4022-4244)
               

               
               36-176, gnl|echTel1|scaffold_285934 (42624-42825)
               

               
               36-176, gnl|fr1|chrUn (65833976-65834195)
               

               
               36-176, gnl|hg17|chr8 (145138023-145138245)
               

               
               36-176, gnl|Hg17|chr8 (145138234-145138094)
               

               
               36-176, gnl|mm7|chr15 (76330990-76331212)
               

               
               36-176, gnl|Mm7|chr15 (76331201-76331061)
               

               
               36-176, gnl|monDom2|scaffold_79 (2061044-2061270)
               

               
               36-176, gnl|oryCun1|scaffold_138473 (38-260)
               

               
               36-176, gnl|panTro1|chr7 (148416306-148416528)
               

               
               36-176, gnl|rn3|chr7 (114313095-114313319)
               

               
               36-176, gnl|tetNig1|chr8 (6706540-6706323)

	36-176, gnl\|bosTau2\|chr14 (228701-228841)
	36-176, gnl\|canFam2\|chr13 (40543436-40543657)
	36-176, gnl\|danRer3\|chr25 (2692946-2692731)
	36-176, gnl\|dasNov1\|scaffold_76285 (4022-4244)
	36-176, gnl\|echTel1\|scaffold_285934 (42624-42825)
	36-176, gnl\|fr1\|chrUn (65833976-65834195)
	36-176, gnl\|hg17\|chr8 (145138023-145138245)
	36-176, gnl\|Hg17\|chr8 (145138234-145138094)
	36-176, gnl\|mm7\|chr15 (76330990-76331212)
	36-176, gnl\|Mm7\|chr15 (76331201-76331061)
	36-176, gnl\|monDom2\|scaffold_79 (2061044-2061270)
	36-176, gnl\|oryCun1\|scaffold_138473 (38-260)
	36-176, gnl\|panTro1\|chr7 (148416306-148416528)
	36-176, gnl\|rn3\|chr7 (114313095-114313319)
	36-176, gnl\|tetNig1\|chr8 (6706540-6706323)