Non-Coding RNA Search

Mixc-0028e10

Sequence:


               
               CTTTCTCCCACGTCACAGGAGAGAAAACGAAGGCCCAGACACACAAGACAAATAGAATCC
TTAGATCCATTTTCCAGACAAGGGACCCAGGTACATCATAGCTAGGAGGCTGCAGCCCAG
AGAGGCCATACTGAAGTCTCAGACAGGCCTGTGGGCCCCAAGAGCCCACCTTCTGTCCTC
CAGGCAGCAGGGACCACCCACAAGCTGGAGCTGCAAAGACTTCTTTCCAGATTGCATGGA
AGGTTCACTAGTTGCAAAATCCCACAACTAGGCATTGTCTTTGGGAAGAAATCCCAGCAC
CCCAGTTGGCCTAATCAGCCTCCCACAAAGTCTCAATCAGAAGAATTCATTCACCTGAAG
GATTTTAGTGTCATGGATAAAAGTAACCTGCAGGATCCTGCCACTTCCCACGTGTATGAT
CCAGAGCAAGTGACTTACATCGGCCTCAGTTTTGCCACATGTAAATGGGAATAATGTAAC
TAGGTTGTTGTGAGGCTTAAAGAACTCATACTTAAATCACTCAAGAGCAGCACAGAGCAA
AAAGGAATATAGCTATCATTAGTTCTACTCTACAGTCATCCCCTAAGAAGCTTCTAGTGC
CAGGCCCTAGCCTTCTATAAAACCGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTCCCACGTCACAGGAGAGAAAACGAAGGCCCAGACACACAAGACAAATAGAATCC
TTAGATCCATTTTCCAGACAAGGGACCCAGGTACATCATAGCTAGGAGGCTGCAGCCCAG
AGAGGCCATACTGAAGTCTCAGACAGGCCTGTGGGCCCCAAGAGCCCACCTTCTGTCCTC
CAGGCAGCAGGGACCACCCACAAGCTGGAGCTGCAAAGACTTCTTTCCAGATTGCATGGA
AGGTTCACTAGTTGCAAAATCCCACAACTAGGCATTGTCTTTGGGAAGAAATCCCAGCAC
CCCAGTTGGCCTAATCAGCCTCCCACAAAGTCTCAATCAGAAGAATTCATTCACCTGAAG
GATTTTAGTGTCATGGATAAAAGTAACCTGCAGGATCCTGCCACTTCCCACGTGTATGAT
CCAGAGCAAGTGACTTACATCGGCCTCAGTTTTGCCACATGTAAATGGGAATAATGTAAC
TAGGTTGTTGTGAGGCTTAAAGAACTCATACTTAAATCACTCAAGAGCAGCACAGAGCAA
AAAGGAATATAGCTATCATTAGTTCTACTCTACAGTCATCCCCTAAGAAGCTTCTAGTGC
CAGGCCCTAGCCTTCTATAAAACCGAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               126-245, - strand, RNAz p=0.531102

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-245, - strand, RNAz p=0.531102

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               47-617, gnl|bosTau2|chr8 (43825992-43826562)
               

               
               47-617, gnl|canFam2|chr11 (71798308-71798978)
               

               
               47-617, gnl|dasNov1|scaffold_200526 (3187-3864)
               

               
               47-617, gnl|hg17|chr9 (114454651-114455291)
               

               
               47-617, gnl|Hg17|chr9 (114455307-114454731)
               

               
               47-617, gnl|loxAfr1|scaffold_28908 (18315-17448)
               

               
               47-617, gnl|mm7|chr4 (62993405-62993981)
               

               
               47-617, gnl|oryCun1|scaffold_143901 (3367-3986)
               

               
               47-617, gnl|panTro1|chr11 (98990844-98991484)
               

               
               47-617, gnl|rheMac2|chr15 (21515732-21515094)
               

               
               47-617, gnl|rn3|chr5 (80536102-80536654)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-617, gnl|bosTau2|chr8 (43825992-43826562)
               

               
               47-617, gnl|canFam2|chr11 (71798308-71798978)
               

               
               47-617, gnl|dasNov1|scaffold_200526 (3187-3864)
               

               
               47-617, gnl|hg17|chr9 (114454651-114455291)
               

               
               47-617, gnl|Hg17|chr9 (114455307-114454731)
               

               
               47-617, gnl|loxAfr1|scaffold_28908 (18315-17448)
               

               
               47-617, gnl|mm7|chr4 (62993405-62993981)
               

               
               47-617, gnl|oryCun1|scaffold_143901 (3367-3986)
               

               
               47-617, gnl|panTro1|chr11 (98990844-98991484)
               

               
               47-617, gnl|rheMac2|chr15 (21515732-21515094)
               

               
               47-617, gnl|rn3|chr5 (80536102-80536654)

	47-617, gnl\|bosTau2\|chr8 (43825992-43826562)
	47-617, gnl\|canFam2\|chr11 (71798308-71798978)
	47-617, gnl\|dasNov1\|scaffold_200526 (3187-3864)
	47-617, gnl\|hg17\|chr9 (114454651-114455291)
	47-617, gnl\|Hg17\|chr9 (114455307-114454731)
	47-617, gnl\|loxAfr1\|scaffold_28908 (18315-17448)
	47-617, gnl\|mm7\|chr4 (62993405-62993981)
	47-617, gnl\|oryCun1\|scaffold_143901 (3367-3986)
	47-617, gnl\|panTro1\|chr11 (98990844-98991484)
	47-617, gnl\|rheMac2\|chr15 (21515732-21515094)
	47-617, gnl\|rn3\|chr5 (80536102-80536654)