Non-Coding RNA Search

Mixc-0031o08

Sequence:


               
               TCTCACTTTCTTTCCCACTGCTTGCTTGCATGTTTTAAGTTAGCTAAACTTTACTTTTTA
TAGACATTCTCTCAAGAGTGCTGAACCTCTTTACCTCTACTCTCCCCTGACTTGGGTATT
TACAGTACCTACTCCCACTATATTTTCTGAGAAGTTACTCTGCATTGTCTCTGTGGGTAT
GGGATTGCTCATAAGAGTAAAGATTTGTGGTTGGTAATGTTAAGATTTTTTGAAACTATT
GAACAAAATGTAAACCAACTATGTACAGGAGCATCAAATTAGGTTTTCTCCTGTAGCATT
ACAGTTAAAAAATAAACTCTCTGGAAACTTCAGTTCATTCTGGAAAAATGCTTCAGTTTT
TCCTAGGAACTTCAAATTGCCCAGACAAAAATAAAGCTTATCCCCAAATTAAAACTAACT
CTGTAACAAGCAACAAAGATGAACAGTAAGTTACCTGCTAATGTTGCTGCTGCAGCCAAT
CCTGCTGCAGTATATGGATCAGTTCCTGGAGGAGCAGCACTAATAATATATGGATTTGGC
ACAAATGCAGCTGGAGCAANGCCTGCTGAGAATAACCAGCTATATGTGGCTGCTGAGCTG
TGGCTAATGCATATTGCTGCTGCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCACTTTCTTTCCCACTGCTTGCTTGCATGTTTTAAGTTAGCTAAACTTTACTTTTTA
TAGACATTCTCTCAAGAGTGCTGAACCTCTTTACCTCTACTCTCCCCTGACTTGGGTATT
TACAGTACCTACTCCCACTATATTTTCTGAGAAGTTACTCTGCATTGTCTCTGTGGGTAT
GGGATTGCTCATAAGAGTAAAGATTTGTGGTTGGTAATGTTAAGATTTTTTGAAACTATT
GAACAAAATGTAAACCAACTATGTACAGGAGCATCAAATTAGGTTTTCTCCTGTAGCATT
ACAGTTAAAAAATAAACTCTCTGGAAACTTCAGTTCATTCTGGAAAAATGCTTCAGTTTT
TCCTAGGAACTTCAAATTGCCCAGACAAAAATAAAGCTTATCCCCAAATTAAAACTAACT
CTGTAACAAGCAACAAAGATGAACAGTAAGTTACCTGCTAATGTTGCTGCTGCAGCCAAT
CCTGCTGCAGTATATGGATCAGTTCCTGGAGGAGCAGCACTAATAATATATGGATTTGGC
ACAAATGCAGCTGGAGCAANGCCTGCTGAGAATAACCAGCTATATGTGGCTGCTGAGCTG
TGGCTAATGCATATTGCTGCTGCTGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               212-318, - strand, RNAz p=0.707986
               

               
               385-588, - strand, RNAz p=0.995709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-318, - strand, RNAz p=0.707986
               

               
               385-588, - strand, RNAz p=0.995709

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               141-588, gnl|bosTau2|chr11 (61357887-61358351)
               

               
               141-588, gnl|Hg17|chr2 (20418604-20419076)
               

               
               141-588, gnl|Mm7|chr12 (8745654-8745207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-588, gnl|bosTau2|chr11 (61357887-61358351)
               

               
               141-588, gnl|Hg17|chr2 (20418604-20419076)
               

               
               141-588, gnl|Mm7|chr12 (8745654-8745207)

	212-318, - strand, RNAz p=0.707986
	385-588, - strand, RNAz p=0.995709

	141-588, gnl\|bosTau2\|chr11 (61357887-61358351)
	141-588, gnl\|Hg17\|chr2 (20418604-20419076)
	141-588, gnl\|Mm7\|chr12 (8745654-8745207)