Non-Coding RNA Search

Mixc-0032j07

Sequence:


               
               AGTGACTGAAGTATCTAAGCGATTGTATGGCATGGGATGTTATGAGATCTCTCTGGGAGA
CACGATTGGCGTGGGAACTCCAGGAAGCATGAAGAAAATATTGGAAAGTGTCATGAAAGA
AATCCCACCACGAGCCCTGGCTGTTCACTGTCATGACACATACGGACAGGCCTTAGCAAA
TATCCTTACAGCCCTTCAGATGGGGATAAATGTGGTGGATTCTGCAGTATCCGGATTAGG
GGGTTGCCCTTATGCAAAGGGCGCTTCTGGGAATGTAGCCACTGAGGATTTGGTCTACAT
GCTTAATGGCCTGGGGCTCAACACAGGTGTGAATCTTTACAAAGTGATGGAAGCTGGCGA
CTTCATTTGCAAAGCGGTGAATAAAACTACAAACTCTAAAGTAGCACAAGCCTCCTTCCA
TGCTTGACTTAAATGCATTTGTGACTTAAGGCTGAGAAGATCCATTTCAGCTACAGATTC
ATCTGAAAATCATGACTGTCAACTTGTGCTGATACGGGAAGTAATAGACAAGAGTGGGGG
AAAAATGGGGGTACTTTCACAAAGCGTATTATTGGCTAGATTACGAAGTCGTGGAGAAGA
AATACCAGCCATCAGTAAATCCAAGCCGAGCTAATGAAAATTGTAGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGACTGAAGTATCTAAGCGATTGTATGGCATGGGATGTTATGAGATCTCTCTGGGAGA
CACGATTGGCGTGGGAACTCCAGGAAGCATGAAGAAAATATTGGAAAGTGTCATGAAAGA
AATCCCACCACGAGCCCTGGCTGTTCACTGTCATGACACATACGGACAGGCCTTAGCAAA
TATCCTTACAGCCCTTCAGATGGGGATAAATGTGGTGGATTCTGCAGTATCCGGATTAGG
GGGTTGCCCTTATGCAAAGGGCGCTTCTGGGAATGTAGCCACTGAGGATTTGGTCTACAT
GCTTAATGGCCTGGGGCTCAACACAGGTGTGAATCTTTACAAAGTGATGGAAGCTGGCGA
CTTCATTTGCAAAGCGGTGAATAAAACTACAAACTCTAAAGTAGCACAAGCCTCCTTCCA
TGCTTGACTTAAATGCATTTGTGACTTAAGGCTGAGAAGATCCATTTCAGCTACAGATTC
ATCTGAAAATCATGACTGTCAACTTGTGCTGATACGGGAAGTAATAGACAAGAGTGGGGG
AAAAATGGGGGTACTTTCACAAAGCGTATTATTGGCTAGATTACGAAGTCGTGGAGAAGA
AATACCAGCCATCAGTAAATCCAAGCCGAGCTAATGAAAATTGTAGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4406665|gb|AAD20054.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4406665|gb|AAD20054.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               24-142, - strand, RNAz p=0.794318
               

               
               520-630, - strand, RNAz p=0.787235

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-142, - strand, RNAz p=0.794318
               

               
               520-630, - strand, RNAz p=0.787235

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127587, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127587, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               24-199, gnl|bosTau2|chr2 (82393421-82393596)
               

               
               24-199, gnl|Hg17|chr1 (23880106-23879931)
               

               
               24-199, gnl|Mm7|chr4 (135338427-135338602)
               


               
               317-634, gnl|bosTau2|chr23 (4087617-4087293)
               

               
               317-634, gnl|canFam2|chr12 (25751202-25751997)
               

               
               317-634, gnl|dasNov1|scaffold_39986 (10886-10077)
               

               
               317-634, gnl|galGal2|chr3 (85860332-85859520)
               

               
               317-634, gnl|hg17|chr6 (55407617-55408419)
               

               
               317-634, gnl|Hg17|chr6 (55408527-55408213)
               

               
               317-634, gnl|mm7|chr9 (76171788-76170999)
               

               
               317-634, gnl|Mm7|chr9 (76170887-76171184)
               

               
               317-634, gnl|monDom2|scaffold_0 (180570337-180569552)
               

               
               317-634, gnl|oryCun1|scaffold_186400 (7091-6277)
               

               
               317-634, gnl|panTro1|chr5 (56694275-56695075)
               

               
               317-634, gnl|rheMac2|chr4 (55082077-55082874)
               

               
               317-634, gnl|rn3|chr8 (80982833-80982029)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-199, gnl|bosTau2|chr2 (82393421-82393596)
               

               
               24-199, gnl|Hg17|chr1 (23880106-23879931)
               

               
               24-199, gnl|Mm7|chr4 (135338427-135338602)
               


               
               317-634, gnl|bosTau2|chr23 (4087617-4087293)
               

               
               317-634, gnl|canFam2|chr12 (25751202-25751997)
               

               
               317-634, gnl|dasNov1|scaffold_39986 (10886-10077)
               

               
               317-634, gnl|galGal2|chr3 (85860332-85859520)
               

               
               317-634, gnl|hg17|chr6 (55407617-55408419)
               

               
               317-634, gnl|Hg17|chr6 (55408527-55408213)
               

               
               317-634, gnl|mm7|chr9 (76171788-76170999)
               

               
               317-634, gnl|Mm7|chr9 (76170887-76171184)
               

               
               317-634, gnl|monDom2|scaffold_0 (180570337-180569552)
               

               
               317-634, gnl|oryCun1|scaffold_186400 (7091-6277)
               

               
               317-634, gnl|panTro1|chr5 (56694275-56695075)
               

               
               317-634, gnl|rheMac2|chr4 (55082077-55082874)
               

               
               317-634, gnl|rn3|chr8 (80982833-80982029)

	24-142, - strand, RNAz p=0.794318
	520-630, - strand, RNAz p=0.787235

	24-199, gnl\|bosTau2\|chr2 (82393421-82393596)
	24-199, gnl\|Hg17\|chr1 (23880106-23879931)
	24-199, gnl\|Mm7\|chr4 (135338427-135338602)

	317-634, gnl\|bosTau2\|chr23 (4087617-4087293)
	317-634, gnl\|canFam2\|chr12 (25751202-25751997)
	317-634, gnl\|dasNov1\|scaffold_39986 (10886-10077)
	317-634, gnl\|galGal2\|chr3 (85860332-85859520)
	317-634, gnl\|hg17\|chr6 (55407617-55408419)
	317-634, gnl\|Hg17\|chr6 (55408527-55408213)
	317-634, gnl\|mm7\|chr9 (76171788-76170999)
	317-634, gnl\|Mm7\|chr9 (76170887-76171184)
	317-634, gnl\|monDom2\|scaffold_0 (180570337-180569552)
	317-634, gnl\|oryCun1\|scaffold_186400 (7091-6277)
	317-634, gnl\|panTro1\|chr5 (56694275-56695075)
	317-634, gnl\|rheMac2\|chr4 (55082077-55082874)
	317-634, gnl\|rn3\|chr8 (80982833-80982029)