Non-Coding RNA Search

Mixc-0034b02

Sequence:


               
               GCAGTCAGCAAAGTTCTCCAAGAAGAGAGTAAACAACAAGAAAATGAGTCTAACTCAGTT
CATGAGGAAGAAACAAAAGTTGAGGAACCAGGGGACGCTGAAGAACAAAAGAATTCTGTC
CAAGAAGAACCCGAAGTCAAACAACATGACCTGGAGATGAAATTATTAAGTGAAACTGTT
TTAGCAGATACTCAAAGAAGGATTACAGAAATATGTATATCCTCCAGAAACCACAGAAGA
CTTTGAAACAGAAAATGCTTTCCCACCCATAGAGGTCATGCTTGAAGTTCATGAGAATGT
CATCTTTTTTTGAGGATCCTATGGTTGCAAGGTGGGATGCTTAAGCTAAACACTGGAAAA
CTGATGGCATCAGCAATGTCTCTCACAAGTCAGAAGAGAGACTTATAACCTTCAGTCTGG
AAACTTTTGGCCCTGTTACCTTGATTCAAGATGCTCATGTTAATATGCCATATCAGTCAT
GGGAGCTAAGACCACTTGATGTGAATAAAGTACTTTTGACGGTGACTACAGTATCTATGG
AG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCAGCAAAGTTCTCCAAGAAGAGAGTAAACAACAAGAAAATGAGTCTAACTCAGTT
CATGAGGAAGAAACAAAAGTTGAGGAACCAGGGGACGCTGAAGAACAAAAGAATTCTGTC
CAAGAAGAACCCGAAGTCAAACAACATGACCTGGAGATGAAATTATTAAGTGAAACTGTT
TTAGCAGATACTCAAAGAAGGATTACAGAAATATGTATATCCTCCAGAAACCACAGAAGA
CTTTGAAACAGAAAATGCTTTCCCACCCATAGAGGTCATGCTTGAAGTTCATGAGAATGT
CATCTTTTTTTGAGGATCCTATGGTTGCAAGGTGGGATGCTTAAGCTAAACACTGGAAAA
CTGATGGCATCAGCAATGTCTCTCACAAGTCAGAAGAGAGACTTATAACCTTCAGTCTGG
AAACTTTTGGCCCTGTTACCTTGATTCAAGATGCTCATGTTAATATGCCATATCAGTCAT
GGGAGCTAAGACCACTTGATGTGAATAAAGTACTTTTGACGGTGACTACAGTATCTATGG
AG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               179-283, + strand, RNAz p=0.537367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-283, + strand, RNAz p=0.537367

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               179-348, gnl|bosTau2|chr5 (51792078-51792246)
               

               
               179-348, gnl|canFam2|chr27 (25380217-25380032)
               

               
               179-348, gnl|echTel1|scaffold_306874 (9835-9649)
               

               
               179-348, gnl|galGal2|chr1 (63760263-63760432)
               

               
               179-348, gnl|hg17|chr12 (25163340-25163524)
               

               
               179-348, gnl|Hg17|chr12 (25163511-25163343)
               

               
               179-348, gnl|loxAfr1|scaffold_1796 (54890-55075)
               

               
               179-348, gnl|mm7|chr6 (145272615-145272797)
               

               
               179-348, gnl|Mm7|chr6 (145272784-145272618)
               

               
               179-348, gnl|monDom2|scaffold_31 (454257-454070)
               

               
               179-348, gnl|oryCun1|scaffold_97824 (7697-7881)
               

               
               179-348, gnl|panTro1|chrUn_random (51564500-51564684)
               

               
               179-348, gnl|rheMac2|chr11 (25396541-25396725)
               

               
               179-348, gnl|rn3|chr4 (183077161-183077345)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-348, gnl|bosTau2|chr5 (51792078-51792246)
               

               
               179-348, gnl|canFam2|chr27 (25380217-25380032)
               

               
               179-348, gnl|echTel1|scaffold_306874 (9835-9649)
               

               
               179-348, gnl|galGal2|chr1 (63760263-63760432)
               

               
               179-348, gnl|hg17|chr12 (25163340-25163524)
               

               
               179-348, gnl|Hg17|chr12 (25163511-25163343)
               

               
               179-348, gnl|loxAfr1|scaffold_1796 (54890-55075)
               

               
               179-348, gnl|mm7|chr6 (145272615-145272797)
               

               
               179-348, gnl|Mm7|chr6 (145272784-145272618)
               

               
               179-348, gnl|monDom2|scaffold_31 (454257-454070)
               

               
               179-348, gnl|oryCun1|scaffold_97824 (7697-7881)
               

               
               179-348, gnl|panTro1|chrUn_random (51564500-51564684)
               

               
               179-348, gnl|rheMac2|chr11 (25396541-25396725)
               

               
               179-348, gnl|rn3|chr4 (183077161-183077345)

	179-348, gnl\|bosTau2\|chr5 (51792078-51792246)
	179-348, gnl\|canFam2\|chr27 (25380217-25380032)
	179-348, gnl\|echTel1\|scaffold_306874 (9835-9649)
	179-348, gnl\|galGal2\|chr1 (63760263-63760432)
	179-348, gnl\|hg17\|chr12 (25163340-25163524)
	179-348, gnl\|Hg17\|chr12 (25163511-25163343)
	179-348, gnl\|loxAfr1\|scaffold_1796 (54890-55075)
	179-348, gnl\|mm7\|chr6 (145272615-145272797)
	179-348, gnl\|Mm7\|chr6 (145272784-145272618)
	179-348, gnl\|monDom2\|scaffold_31 (454257-454070)
	179-348, gnl\|oryCun1\|scaffold_97824 (7697-7881)
	179-348, gnl\|panTro1\|chrUn_random (51564500-51564684)
	179-348, gnl\|rheMac2\|chr11 (25396541-25396725)
	179-348, gnl\|rn3\|chr4 (183077161-183077345)