Non-Coding RNA Search

Mixc-0034i20

Sequence:


               
               CTGGGGCCACTCCCCATTTCCCCAGGGNCAGGCGGGAAGGAGAAATACATTCATGGAGGG
GAGGCAGTGGCAGAATCTTGCCCTAATACTGCACTCTGAGCAATGAGGTCCATGGGAAAA
GTTAAATGGGAAATCCAAGAGATACTACAAACTGGGGAAAAAAAACAACCCCCCCCACCC
CACAAATGGAGACAAACCTAGATAGGTGATTGGGAATAAGAAGTTGGTGAAGGGCAGCCT
ACCCCCCAACCCAGGAGACAGACACTCCCATCCTTGACACCCCACCCTACCCAACATTAA
AAACACATCAGGGGAGCAGGAGGGGAGAGGCCACTTGCTCCTCTCCCATTTGGTCAGTGG
AGGGGTCAGGGCAAGGCTGAGTGGTCCAGATGCCACACAGCTGGCTGCAGGTGGGGGGAC
TCCTAACAGCCCCCCGCACTGCAACCTGAAGCCCCAAGCTGCCCACTGCCATGGACTCCT
CGGCCCCTCCTCCGCCCCCTTCACAGGAGAAATGACAGTCATTAAGTGGTGCCTCTCTCT
CCAGCTCCTGGAGGAACCGCTCCGCCCCCACCTCGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCCACTCCCCATTTCCCCAGGGNCAGGCGGGAAGGAGAAATACATTCATGGAGGG
GAGGCAGTGGCAGAATCTTGCCCTAATACTGCACTCTGAGCAATGAGGTCCATGGGAAAA
GTTAAATGGGAAATCCAAGAGATACTACAAACTGGGGAAAAAAAACAACCCCCCCCACCC
CACAAATGGAGACAAACCTAGATAGGTGATTGGGAATAAGAAGTTGGTGAAGGGCAGCCT
ACCCCCCAACCCAGGAGACAGACACTCCCATCCTTGACACCCCACCCTACCCAACATTAA
AAACACATCAGGGGAGCAGGAGGGGAGAGGCCACTTGCTCCTCTCCCATTTGGTCAGTGG
AGGGGTCAGGGCAAGGCTGAGTGGTCCAGATGCCACACAGCTGGCTGCAGGTGGGGGGAC
TCCTAACAGCCCCCCGCACTGCAACCTGAAGCCCCAAGCTGCCCACTGCCATGGACTCCT
CGGCCCCTCCTCCGCCCCCTTCACAGGAGAAATGACAGTCATTAAGTGGTGCCTCTCTCT
CCAGCTCCTGGAGGAACCGCTCCGCCCCCACCTCGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               363-478, + strand, RNAz p=0.921403

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-478, + strand, RNAz p=0.921403

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               285-578, gnl|bosTau2|chr25 (32318206-32317911)
               

               
               285-578, gnl|Hg17|chr7 (99922780-99923058)
               

               
               285-578, gnl|Mm7|chr5 (136445187-136444937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-578, gnl|bosTau2|chr25 (32318206-32317911)
               

               
               285-578, gnl|Hg17|chr7 (99922780-99923058)
               

               
               285-578, gnl|Mm7|chr5 (136445187-136444937)

	285-578, gnl\|bosTau2\|chr25 (32318206-32317911)
	285-578, gnl\|Hg17\|chr7 (99922780-99923058)
	285-578, gnl\|Mm7\|chr5 (136445187-136444937)