Non-Coding RNA Search

Mixc-0035h24

Sequence:


               
               TTTTTTTTCCAAATAGATATCATATTCAAAAAAAAGGCAACATTCAAATTATATAGAATC
TAGTTTTTAAAATCAGCACAGATCTTCTTAAAAAAAAACTGTGAACTCTGTTTTGAAATA
CTCGTTACTAAAGCTGTTTATAAACCACAGGTGCCATAAGATCCCCCAATGGACTCAAGT
TATCTCTGCTCTTCCACGGGCTTGTTCCTCTCGGTTTAGCTTTAGGGAGCATGTTTCTAA
AAGCACCGCTCATCCACCAGAACCCCCATCGGGTCGTTTGGAGGCCTTTCAGCTTTAAAT
GTACAGGCTTAAAGTGCGCTTGCAAACGTTCGCTCTCCTTGTATTTCTGAATGTGTATCG
CCTTAGCTGGCTACCTGGCGTTCTGCATGCAGCCTCCTGTGGTCGCATGAGAGGAAAACA
GGCTCTTCTAAACGAGCAGGGATTTCGCACTCTGGGAAAAGCTGATGTGCAAAAGAACAG
TCAAGGAAGGAAGAATGGATGGCTCTGTTGATGGTCCTTCCTGAGGGCCCTCTTTGGGGA
GCACTGAAGACCTCCTTTCGGGATTCTGGGAAATGGAAAAAATAATCTCATTTCAAGATT
TGATGAAATAAAAATCCTGCAACATAGTGGATACGTTATACATAAATTGGCTGATTCTCT
CC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCCAAATAGATATCATATTCAAAAAAAAGGCAACATTCAAATTATATAGAATC
TAGTTTTTAAAATCAGCACAGATCTTCTTAAAAAAAAACTGTGAACTCTGTTTTGAAATA
CTCGTTACTAAAGCTGTTTATAAACCACAGGTGCCATAAGATCCCCCAATGGACTCAAGT
TATCTCTGCTCTTCCACGGGCTTGTTCCTCTCGGTTTAGCTTTAGGGAGCATGTTTCTAA
AAGCACCGCTCATCCACCAGAACCCCCATCGGGTCGTTTGGAGGCCTTTCAGCTTTAAAT
GTACAGGCTTAAAGTGCGCTTGCAAACGTTCGCTCTCCTTGTATTTCTGAATGTGTATCG
CCTTAGCTGGCTACCTGGCGTTCTGCATGCAGCCTCCTGTGGTCGCATGAGAGGAAAACA
GGCTCTTCTAAACGAGCAGGGATTTCGCACTCTGGGAAAAGCTGATGTGCAAAAGAACAG
TCAAGGAAGGAAGAATGGATGGCTCTGTTGATGGTCCTTCCTGAGGGCCCTCTTTGGGGA
GCACTGAAGACCTCCTTTCGGGATTCTGGGAAATGGAAAAAATAATCTCATTTCAAGATT
TGATGAAATAAAAATCCTGCAACATAGTGGATACGTTATACATAAATTGGCTGATTCTCT
CC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               423-535, - strand, RNAz p=0.831747
               

               
               461-602, - strand, RNAz p=0.995664

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-535, - strand, RNAz p=0.831747
               

               
               461-602, - strand, RNAz p=0.995664

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-660, gnl|bosTau2|chr24 (18600384-18601047)
               

               
               1-660, gnl|canFam2|chr7 (58052812-58051825)
               

               
               1-660, gnl|dasNov1|scaffold_763 (97030-97981)
               

               
               1-660, gnl|echTel1|scaffold_316766 (186063-185098)
               

               
               1-660, gnl|galGal2|chr2 (106723288-106724281)
               

               
               1-660, gnl|hg17|chr18 (30722036-30723005)
               

               
               1-660, gnl|Hg17|chr18 (30722492-30723150)
               

               
               1-660, gnl|loxAfr1|scaffold_511 (43537-44580)
               

               
               1-660, gnl|mm7|chr18 (24040794-24041756)
               

               
               1-660, gnl|Mm7|chr18 (24041232-24041901)
               

               
               1-660, gnl|monDom2|scaffold_4 (120209496-120208532)
               

               
               1-660, gnl|oryCun1|scaffold_205762 (73426-74395)
               

               
               1-660, gnl|panTro1|chr17 (26676408-26677381)
               

               
               1-660, gnl|rheMac2|chr18 (27877677-27878651)
               

               
               1-660, gnl|rn3|chr18 (15600832-15601805)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr24 (18600384-18601047)
               

               
               1-660, gnl|canFam2|chr7 (58052812-58051825)
               

               
               1-660, gnl|dasNov1|scaffold_763 (97030-97981)
               

               
               1-660, gnl|echTel1|scaffold_316766 (186063-185098)
               

               
               1-660, gnl|galGal2|chr2 (106723288-106724281)
               

               
               1-660, gnl|hg17|chr18 (30722036-30723005)
               

               
               1-660, gnl|Hg17|chr18 (30722492-30723150)
               

               
               1-660, gnl|loxAfr1|scaffold_511 (43537-44580)
               

               
               1-660, gnl|mm7|chr18 (24040794-24041756)
               

               
               1-660, gnl|Mm7|chr18 (24041232-24041901)
               

               
               1-660, gnl|monDom2|scaffold_4 (120209496-120208532)
               

               
               1-660, gnl|oryCun1|scaffold_205762 (73426-74395)
               

               
               1-660, gnl|panTro1|chr17 (26676408-26677381)
               

               
               1-660, gnl|rheMac2|chr18 (27877677-27878651)
               

               
               1-660, gnl|rn3|chr18 (15600832-15601805)

	423-535, - strand, RNAz p=0.831747
	461-602, - strand, RNAz p=0.995664

	1-660, gnl\|bosTau2\|chr24 (18600384-18601047)
	1-660, gnl\|canFam2\|chr7 (58052812-58051825)
	1-660, gnl\|dasNov1\|scaffold_763 (97030-97981)
	1-660, gnl\|echTel1\|scaffold_316766 (186063-185098)
	1-660, gnl\|galGal2\|chr2 (106723288-106724281)
	1-660, gnl\|hg17\|chr18 (30722036-30723005)
	1-660, gnl\|Hg17\|chr18 (30722492-30723150)
	1-660, gnl\|loxAfr1\|scaffold_511 (43537-44580)
	1-660, gnl\|mm7\|chr18 (24040794-24041756)
	1-660, gnl\|Mm7\|chr18 (24041232-24041901)
	1-660, gnl\|monDom2\|scaffold_4 (120209496-120208532)
	1-660, gnl\|oryCun1\|scaffold_205762 (73426-74395)
	1-660, gnl\|panTro1\|chr17 (26676408-26677381)
	1-660, gnl\|rheMac2\|chr18 (27877677-27878651)
	1-660, gnl\|rn3\|chr18 (15600832-15601805)