Non-Coding RNA Search

Mixc-0035j14

Sequence:


               
               GAAGCAGTTGAGTCATTTGTATCTGGTAGTTAGGGGCTTGGGTTCCTGCCCTTCCCTTCT
CAGCAAAGCCAAGAGTTCACCTGAGGTAATACATTTGCCTTGAGGGTGAGGACTGAATTG
CAGCAAATAACTTACATGTATTTGCATATTTAATCAGTACTCAGAAGAGATTATAACCAA
AACCTGTTCTGGAGAGTTGCTTACTCATGGCCTTTGGAATTGTGTGGCGCTGGGACAGGC
AGGTGCCAACTGTTTGCTCATTCGCTGACCTACTGGCCTTCCACAGTTTGCTGTGTGGGT
GTTGAGACTACTGAAATAAAGTGAGTTGTGTTAGATGGCCCCCGCTGTCTACCCGAACAC
CNTGGATTCATTTGCGATCTGGGATCCTAGTTCTGCAGTTGGGCTACTGGCCCAAACTGT
GGCCCAGAGCAAGTGAGTCAGTTCTGAGTGGCTGGCTCTGACTCTCTGGGAACAGAGACG
AAATGCAGCCTAGAGCGCTTGTCAGCCAAATCCACAAATGTGTGGCAGTTTGGAAACACT
GGACATCTGTTCCTCTTCATTTAAAATTTACTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCAGTTGAGTCATTTGTATCTGGTAGTTAGGGGCTTGGGTTCCTGCCCTTCCCTTCT
CAGCAAAGCCAAGAGTTCACCTGAGGTAATACATTTGCCTTGAGGGTGAGGACTGAATTG
CAGCAAATAACTTACATGTATTTGCATATTTAATCAGTACTCAGAAGAGATTATAACCAA
AACCTGTTCTGGAGAGTTGCTTACTCATGGCCTTTGGAATTGTGTGGCGCTGGGACAGGC
AGGTGCCAACTGTTTGCTCATTCGCTGACCTACTGGCCTTCCACAGTTTGCTGTGTGGGT
GTTGAGACTACTGAAATAAAGTGAGTTGTGTTAGATGGCCCCCGCTGTCTACCCGAACAC
CNTGGATTCATTTGCGATCTGGGATCCTAGTTCTGCAGTTGGGCTACTGGCCCAAACTGT
GGCCCAGAGCAAGTGAGTCAGTTCTGAGTGGCTGGCTCTGACTCTCTGGGAACAGAGACG
AAATGCAGCCTAGAGCGCTTGTCAGCCAAATCCACAAATGTGTGGCAGTTTGGAAACACT
GGACATCTGTTCCTCTTCATTTAAAATTTACTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               377-533, + strand, RNAz p=0.971525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-533, + strand, RNAz p=0.971525

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-565, gnl|bosTau2|chr19 (5069606-5070174)
               

               
               2-565, gnl|Hg17|chr17 (55277764-55278336)
               

               
               2-565, gnl|Mm7|chr11 (86650648-86650152)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-565, gnl|bosTau2|chr19 (5069606-5070174)
               

               
               2-565, gnl|Hg17|chr17 (55277764-55278336)
               

               
               2-565, gnl|Mm7|chr11 (86650648-86650152)

	2-565, gnl\|bosTau2\|chr19 (5069606-5070174)
	2-565, gnl\|Hg17\|chr17 (55277764-55278336)
	2-565, gnl\|Mm7\|chr11 (86650648-86650152)