Non-Coding RNA Search

Mixc-0036m21

Sequence:


               
               CGAAAACTCCCCTCTAGCCCATAGAGGGGGACTGCATTTCCTATGGTGCTCTGCGACCCC
GCCGGCGCGGAGCCTTTTGGGAAATGAAGTCTTTTTTCAAAGAGCTTGCCGCCCTGCCCG
ATTCAGGCCCTTGCATCTTGGCAGATTAGAGGCGTTTGGAGAAAGAGGAACCTAGCTGTG
GATCCCGAGTTTGAGAGTGTGACTGATTTGATGCGGAGCGTACCTTTGAGGATCTCTCAG
GGGAAAGTGTGCTACAGATTCTCGCGGTCATCACGCCCTTCGCCTGAGGCCACAGCCCAC
CTGGAGTGGGCCTGATTAGTTCCCGACCCTAGCGACCAAGCCCGGGACGCGCGGAATCGG
GGTTGGGGGCTGGGAGGTCTGGCGGACCGACCTGGGGGCAAACTCTGTAGTGTAGAGGAG
GGTGTCTAGTGTTCAAAGGTCAGAGGTCAATGTCGCGAGTTGTGGGGGATCGAAAGTCGG
AGGGGTACTAAGGAGAAACTCAGGTANGGACTGAACAGTCAGGTTACAGGTTTGTGGGAA
AAGGCCTTGGAAGGCGGGGAAGCCAGGAGTCAGAGGTCGCCTACTGGGGGGAAGGCGGAG
AGACTTACGAGAGAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAAACTCCCCTCTAGCCCATAGAGGGGGACTGCATTTCCTATGGTGCTCTGCGACCCC
GCCGGCGCGGAGCCTTTTGGGAAATGAAGTCTTTTTTCAAAGAGCTTGCCGCCCTGCCCG
ATTCAGGCCCTTGCATCTTGGCAGATTAGAGGCGTTTGGAGAAAGAGGAACCTAGCTGTG
GATCCCGAGTTTGAGAGTGTGACTGATTTGATGCGGAGCGTACCTTTGAGGATCTCTCAG
GGGAAAGTGTGCTACAGATTCTCGCGGTCATCACGCCCTTCGCCTGAGGCCACAGCCCAC
CTGGAGTGGGCCTGATTAGTTCCCGACCCTAGCGACCAAGCCCGGGACGCGCGGAATCGG
GGTTGGGGGCTGGGAGGTCTGGCGGACCGACCTGGGGGCAAACTCTGTAGTGTAGAGGAG
GGTGTCTAGTGTTCAAAGGTCAGAGGTCAATGTCGCGAGTTGTGGGGGATCGAAAGTCGG
AGGGGTACTAAGGAGAAACTCAGGTANGGACTGAACAGTCAGGTTACAGGTTTGTGGGAA
AAGGCCTTGGAAGGCGGGGAAGCCAGGAGTCAGAGGTCGCCTACTGGGGGGAAGGCGGAG
AGACTTACGAGAGAACACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-115, + strand, RNAz p=0.991996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-115, + strand, RNAz p=0.991996

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               24-105, + strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               24-105, + strand, RNAmicro p=1

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC031649, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC031649, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               13-618, gnl|bosTau2|chr3 (16402624-16403240)
               

               
               13-618, gnl|canFam2|chr17 (63309301-63309850)
               

               
               13-618, gnl|dasNov1|scaffold_13873 (9577-8998)
               

               
               13-618, gnl|echTel1|scaffold_312232 (72178-71577)
               

               
               13-618, gnl|hg17|chr1 (147950889-147951436)
               

               
               13-618, gnl|Hg17|chr1 (147951528-147950919)
               

               
               13-618, gnl|mm7|chr3 (95008692-95008126)
               

               
               13-618, gnl|Mm7|chr3 (95008014-95008660)
               

               
               13-618, gnl|oryCun1|scaffold_213457 (39451-38899)
               

               
               13-618, gnl|panTro1|chr1 (129687289-129687836)
               

               
               13-618, gnl|rheMac2|chr1 (129590766-129591312)
               

               
               13-618, gnl|rn3|chr2 (190000827-190000269)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-618, gnl|bosTau2|chr3 (16402624-16403240)
               

               
               13-618, gnl|canFam2|chr17 (63309301-63309850)
               

               
               13-618, gnl|dasNov1|scaffold_13873 (9577-8998)
               

               
               13-618, gnl|echTel1|scaffold_312232 (72178-71577)
               

               
               13-618, gnl|hg17|chr1 (147950889-147951436)
               

               
               13-618, gnl|Hg17|chr1 (147951528-147950919)
               

               
               13-618, gnl|mm7|chr3 (95008692-95008126)
               

               
               13-618, gnl|Mm7|chr3 (95008014-95008660)
               

               
               13-618, gnl|oryCun1|scaffold_213457 (39451-38899)
               

               
               13-618, gnl|panTro1|chr1 (129687289-129687836)
               

               
               13-618, gnl|rheMac2|chr1 (129590766-129591312)
               

               
               13-618, gnl|rn3|chr2 (190000827-190000269)

	13-618, gnl\|bosTau2\|chr3 (16402624-16403240)
	13-618, gnl\|canFam2\|chr17 (63309301-63309850)
	13-618, gnl\|dasNov1\|scaffold_13873 (9577-8998)
	13-618, gnl\|echTel1\|scaffold_312232 (72178-71577)
	13-618, gnl\|hg17\|chr1 (147950889-147951436)
	13-618, gnl\|Hg17\|chr1 (147951528-147950919)
	13-618, gnl\|mm7\|chr3 (95008692-95008126)
	13-618, gnl\|Mm7\|chr3 (95008014-95008660)
	13-618, gnl\|oryCun1\|scaffold_213457 (39451-38899)
	13-618, gnl\|panTro1\|chr1 (129687289-129687836)
	13-618, gnl\|rheMac2\|chr1 (129590766-129591312)
	13-618, gnl\|rn3\|chr2 (190000827-190000269)