Non-Coding RNA Search

Mixc-0037,b19

Sequence:


               
               TTTTTTTTTTCATCTTGTCTAGCTTCAGTCTAAACAAGAAAACATCTTATTGAAAAAGGG
GGTGCGGGCGGGGGGGAAGAGAAAGGTGATATTTAATTTTATTGGGGGAGAACAGATCAT
GACTGGAGAATGCCCGGGGCTAAATGAGACCATCAAACCAAGAGCAGAGCAGCGAACCGC
GTGCACGAATATGAAGTAATATCTTTCCACGCTGAGGGAAGCTGACACTCAATTTCAGAA
GCTTCAGGCGGGCGGCTCAGCTCGGAGTCCAGTGAAATCATAGCTGCCTCCTCGGAACCG
TTTCCCACTGCTCCCACTCTCCACGGTGAAAGCTTAAAAATGCAAATGCAATGAGGCCAG
CGAAAGAAAAATATCCAGGCTAACTGTGCTCGTCGTCCTGGCAGGACCTTCATGGGAAAG
ATACAGGCAGCTCTTGACTTTCCATCAGAGGACAATCCAGCCGGGGCCTCTCGGCCACTG
TGTGGCGTTGGCTCACTTACGGTTCAGAAAAGGCAGGCGTACAGAGGTGTCTCTTATTTC
CTCTCAAACAGGCTGAGAACTAAGGGCAGACACTCTCCAAACCCAAAAAGAACGAGGCCC
TCGCCCTGCGAGGGAGGGAAGTTTTAGTCAATTCATCACGCAGTCGTTACACCCTGACCC
TGTGTGCGCGGNCTCGTGCTGGCTTCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCATCTTGTCTAGCTTCAGTCTAAACAAGAAAACATCTTATTGAAAAAGGG
GGTGCGGGCGGGGGGGAAGAGAAAGGTGATATTTAATTTTATTGGGGGAGAACAGATCAT
GACTGGAGAATGCCCGGGGCTAAATGAGACCATCAAACCAAGAGCAGAGCAGCGAACCGC
GTGCACGAATATGAAGTAATATCTTTCCACGCTGAGGGAAGCTGACACTCAATTTCAGAA
GCTTCAGGCGGGCGGCTCAGCTCGGAGTCCAGTGAAATCATAGCTGCCTCCTCGGAACCG
TTTCCCACTGCTCCCACTCTCCACGGTGAAAGCTTAAAAATGCAAATGCAATGAGGCCAG
CGAAAGAAAAATATCCAGGCTAACTGTGCTCGTCGTCCTGGCAGGACCTTCATGGGAAAG
ATACAGGCAGCTCTTGACTTTCCATCAGAGGACAATCCAGCCGGGGCCTCTCGGCCACTG
TGTGGCGTTGGCTCACTTACGGTTCAGAAAAGGCAGGCGTACAGAGGTGTCTCTTATTTC
CTCTCAAACAGGCTGAGAACTAAGGGCAGACACTCTCCAAACCCAAAAAGAACGAGGCCC
TCGCCCTGCGAGGGAGGGAAGTTTTAGTCAATTCATCACGCAGTCGTTACACCCTGACCC
TGTGTGCGCGGNCTCGTGCTGGCTTCTGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               6-116, + strand, RNAz p=0.584294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-116, + strand, RNAz p=0.584294

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               6-391, gnl|bosTau2|chr16 (50451537-50451920)
               

               
               6-391, gnl|canFam2|chr7 (11021375-11022195)
               

               
               6-391, gnl|dasNov1|scaffold_1580 (83529-84265)
               

               
               6-391, gnl|echTel1|scaffold_273422 (8626-9397)
               

               
               6-391, gnl|hg17|chr1 (205966856-205967577)
               

               
               6-391, gnl|Hg17|chr1 (205966932-205967301)
               

               
               6-391, gnl|loxAfr1|scaffold_32222 (10955-10228)
               

               
               6-391, gnl|mm7|chr1 (193086992-193087692)
               

               
               6-391, gnl|Mm7|chr1 (193087091-193087440)
               

               
               6-391, gnl|monDom2|scaffold_13 (12251827-12252585)
               

               
               6-391, gnl|oryCun1|scaffold_212714 (72853-72123)
               

               
               6-391, gnl|panTro1|chr1 (189578831-189579553)
               

               
               6-391, gnl|rheMac2|chr1 (161001373-161000656)
               

               
               6-391, gnl|rn3|chr13 (109568718-109569424)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-391, gnl|bosTau2|chr16 (50451537-50451920)
               

               
               6-391, gnl|canFam2|chr7 (11021375-11022195)
               

               
               6-391, gnl|dasNov1|scaffold_1580 (83529-84265)
               

               
               6-391, gnl|echTel1|scaffold_273422 (8626-9397)
               

               
               6-391, gnl|hg17|chr1 (205966856-205967577)
               

               
               6-391, gnl|Hg17|chr1 (205966932-205967301)
               

               
               6-391, gnl|loxAfr1|scaffold_32222 (10955-10228)
               

               
               6-391, gnl|mm7|chr1 (193086992-193087692)
               

               
               6-391, gnl|Mm7|chr1 (193087091-193087440)
               

               
               6-391, gnl|monDom2|scaffold_13 (12251827-12252585)
               

               
               6-391, gnl|oryCun1|scaffold_212714 (72853-72123)
               

               
               6-391, gnl|panTro1|chr1 (189578831-189579553)
               

               
               6-391, gnl|rheMac2|chr1 (161001373-161000656)
               

               
               6-391, gnl|rn3|chr13 (109568718-109569424)

	6-391, gnl\|bosTau2\|chr16 (50451537-50451920)
	6-391, gnl\|canFam2\|chr7 (11021375-11022195)
	6-391, gnl\|dasNov1\|scaffold_1580 (83529-84265)
	6-391, gnl\|echTel1\|scaffold_273422 (8626-9397)
	6-391, gnl\|hg17\|chr1 (205966856-205967577)
	6-391, gnl\|Hg17\|chr1 (205966932-205967301)
	6-391, gnl\|loxAfr1\|scaffold_32222 (10955-10228)
	6-391, gnl\|mm7\|chr1 (193086992-193087692)
	6-391, gnl\|Mm7\|chr1 (193087091-193087440)
	6-391, gnl\|monDom2\|scaffold_13 (12251827-12252585)
	6-391, gnl\|oryCun1\|scaffold_212714 (72853-72123)
	6-391, gnl\|panTro1\|chr1 (189578831-189579553)
	6-391, gnl\|rheMac2\|chr1 (161001373-161000656)
	6-391, gnl\|rn3\|chr13 (109568718-109569424)