Non-Coding RNA Search

Mixc-0037,f02

Sequence:


               
               CGCCCCACCAATATCCCTGTCTCGGCTTCTTGAGAAACTCAACTTTCCTTTCCTCCTCTT
TCTTCATGGCTGCTGATTTAAGATCTGCTTCTAGTGAGTTTTTCCTGGGTGAAGGCGGTA
AACTGGGATAGATAGACTCACATTCCTCCCCCTCCCCAGCCCCAAACCCCGCCGCTTCAT
CTGTATTCTTTGGGCTGAGTGGTCTCCTTTTGGAGTTGCTGCAGGGACGGTGTATTCAAA
GAAAAAAGAGCTTTTTCATTCACTGCCCAGCAGGCTCGGCTGCTGCACCCTCACAGCCAG
GAAAGGCAGGAATTAAACCCAGTTCTCCCATCCTCTCAGCCGAAGAAACTCCCAGTTTTA
AGCTACGGGGAGGCACTGGGCCGAAAATCAGGCCCTGATGCCAGCAGGGCCGAAGTCTTA
CCCCCCTTCTAATCCAAGTCCGAGTAACCAGACCTGGCAAGGTAATGGGAAAAGGTTCCC
GGGCAGGGAAGGAAAAATTGTACATCTGATACCTGAACTACATCTTCTAATACTTAAAAT
TGTTTGTCAGACTCCTATTGCAAGGCCTTCTCTATGACCAGACTTACCAGATCCTCGCAA
AGCTCCCCTGCTGGGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCACCAATATCCCTGTCTCGGCTTCTTGAGAAACTCAACTTTCCTTTCCTCCTCTT
TCTTCATGGCTGCTGATTTAAGATCTGCTTCTAGTGAGTTTTTCCTGGGTGAAGGCGGTA
AACTGGGATAGATAGACTCACATTCCTCCCCCTCCCCAGCCCCAAACCCCGCCGCTTCAT
CTGTATTCTTTGGGCTGAGTGGTCTCCTTTTGGAGTTGCTGCAGGGACGGTGTATTCAAA
GAAAAAAGAGCTTTTTCATTCACTGCCCAGCAGGCTCGGCTGCTGCACCCTCACAGCCAG
GAAAGGCAGGAATTAAACCCAGTTCTCCCATCCTCTCAGCCGAAGAAACTCCCAGTTTTA
AGCTACGGGGAGGCACTGGGCCGAAAATCAGGCCCTGATGCCAGCAGGGCCGAAGTCTTA
CCCCCCTTCTAATCCAAGTCCGAGTAACCAGACCTGGCAAGGTAATGGGAAAAGGTTCCC
GGGCAGGGAAGGAAAAATTGTACATCTGATACCTGAACTACATCTTCTAATACTTAAAAT
TGTTTGTCAGACTCCTATTGCAAGGCCTTCTCTATGACCAGACTTACCAGATCCTCGCAA
AGCTCCCCTGCTGGGTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-479, - strand, RNAz p=0.947447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-479, - strand, RNAz p=0.947447

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               404-511, - strand, RNAmicro p=0.915134

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               404-511, - strand, RNAmicro p=0.915134

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-607, gnl|bosTau2|chr5 (71254370-71254887)
               

               
               99-607, gnl|Hg17|chr22 (40165341-40165837)
               

               
               99-607, gnl|Mm7|chr15 (81940959-81941465)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-607, gnl|bosTau2|chr5 (71254370-71254887)
               

               
               99-607, gnl|Hg17|chr22 (40165341-40165837)
               

               
               99-607, gnl|Mm7|chr15 (81940959-81941465)

	99-607, gnl\|bosTau2\|chr5 (71254370-71254887)
	99-607, gnl\|Hg17\|chr22 (40165341-40165837)
	99-607, gnl\|Mm7\|chr15 (81940959-81941465)