Non-Coding RNA Search

Mixc-0037,h08

Sequence:


               
               GCCTACGGCAGCCTCTTTGACAGGCTGGGGCTGCAGTGCCTGCAGGTCCAGGCAGACGTG
GGCAGCATCGGGGGCACGATGTCTCACGAGTTCCAGCTGCCGGTGGACGTCGGGGAGGAC
CGGCTTGCGCTCTGTCCCCGCTGCAGCTTCTCGGCCAACGTGGAGACCCTGGACTTGGCA
CAGACGAACTGCCCTGCTTGCCAGGGACCACTGACCGAAACCAAAGGCATCGAGGTGGGG
CACACGTTTTACCTGGGCACCAAGTACTCCTCCATCTTCAATGCCCAGTTCACCAATGTC
CACGGCAAAGCATCCCTGGCTGAAATGGGGTGCTATGGCTTGGGGGTGACCCGGATCTTG
GCCGCTGCCATTGAAGTCCTCTCTGCAGAAGACTGCATCCGCTGGCCCGGCCTCCTGGCC
CCTTACCAAGTCTGCCTCATCCCCCCTAAGAAGGGCAGCAAGGAGGAGGCAGCCGCAGAG
CTCACAGGGCACCTGTACGACCACATCACCGAGGCGGTGCCACAGCTCCGTGGGGAGGTC
CTGCTGGACGACAGGACCCATCTGACCATCGGGAACAGACTGAAAGATGCTGACAAGCTC
GGCTACCCCTTCGTGATCATTCGCGGGCAAGAGGGCCCTGGACGAGCCTGCACATTTTGA
GGTTCGGTGCCAGAACACAGGCGAGGTGGTCTTCCTCACCAGAGAGGGAGTCCTGGAATT
ACTGAGCCAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTACGGCAGCCTCTTTGACAGGCTGGGGCTGCAGTGCCTGCAGGTCCAGGCAGACGTG
GGCAGCATCGGGGGCACGATGTCTCACGAGTTCCAGCTGCCGGTGGACGTCGGGGAGGAC
CGGCTTGCGCTCTGTCCCCGCTGCAGCTTCTCGGCCAACGTGGAGACCCTGGACTTGGCA
CAGACGAACTGCCCTGCTTGCCAGGGACCACTGACCGAAACCAAAGGCATCGAGGTGGGG
CACACGTTTTACCTGGGCACCAAGTACTCCTCCATCTTCAATGCCCAGTTCACCAATGTC
CACGGCAAAGCATCCCTGGCTGAAATGGGGTGCTATGGCTTGGGGGTGACCCGGATCTTG
GCCGCTGCCATTGAAGTCCTCTCTGCAGAAGACTGCATCCGCTGGCCCGGCCTCCTGGCC
CCTTACCAAGTCTGCCTCATCCCCCCTAAGAAGGGCAGCAAGGAGGAGGCAGCCGCAGAG
CTCACAGGGCACCTGTACGACCACATCACCGAGGCGGTGCCACAGCTCCGTGGGGAGGTC
CTGCTGGACGACAGGACCCATCTGACCATCGGGAACAGACTGAAAGATGCTGACAAGCTC
GGCTACCCCTTCGTGATCATTCGCGGGCAAGAGGGCCCTGGACGAGCCTGCACATTTTGA
GGTTCGGTGCCAGAACACAGGCGAGGTGGTCTTCCTCACCAGAGAGGGAGTCCTGGAATT
ACTGAGCCAAGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55587120|ref|XP_513427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55587120|ref|XP_513427.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               178-297, + strand, RNAz p=0.808276
               

               
               200-319, - strand, RNAz p=0.551475
               

               
               360-479, - strand, RNAz p=0.759548

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-297, + strand, RNAz p=0.808276
               

               
               200-319, - strand, RNAz p=0.551475
               

               
               360-479, - strand, RNAz p=0.759548

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-733, gnl|bosTau2|chr3 (60373758-60374489)
               

               
               1-733, gnl|canFam2|chr5 (57401929-57401111)
               

               
               1-733, gnl|danRer3|chr6 (14261691-14262503)
               

               
               1-733, gnl|dasNov1|scaffold_21037 (8395-7574)
               

               
               1-733, gnl|echTel1|scaffold_312114 (8669-9491)
               

               
               1-733, gnl|fr1|chrUn (247563234-247564048)
               

               
               1-733, gnl|galGal2|chr8 (25484834-25485653)
               

               
               1-733, gnl|hg17|chr1 (54935419-54936238)
               

               
               1-733, gnl|Hg17|chr1 (54936171-54935440)
               

               
               1-733, gnl|loxAfr1|scaffold_7811 (13061-12243)
               

               
               1-733, gnl|mm7|chr4 (106031005-106030189)
               

               
               1-733, gnl|Mm7|chr4 (106030254-106030985)
               

               
               1-733, gnl|monDom2|scaffold_40 (21230922-21230109)
               

               
               1-733, gnl|oryCun1|scaffold_909 (5053-4237)
               

               
               1-733, gnl|panTro1|chr1 (53222407-53223226)
               

               
               1-733, gnl|rheMac2|chr1 (57628109-57628928)
               

               
               1-733, gnl|rn3|chr5 (127736544-127735728)
               

               
               1-733, gnl|tetNig1|chr1 (15669706-15668892)
               

               
               1-733, gnl|xenTro1|scaffold_197 (1185833-1185023)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-733, gnl|bosTau2|chr3 (60373758-60374489)
               

               
               1-733, gnl|canFam2|chr5 (57401929-57401111)
               

               
               1-733, gnl|danRer3|chr6 (14261691-14262503)
               

               
               1-733, gnl|dasNov1|scaffold_21037 (8395-7574)
               

               
               1-733, gnl|echTel1|scaffold_312114 (8669-9491)
               

               
               1-733, gnl|fr1|chrUn (247563234-247564048)
               

               
               1-733, gnl|galGal2|chr8 (25484834-25485653)
               

               
               1-733, gnl|hg17|chr1 (54935419-54936238)
               

               
               1-733, gnl|Hg17|chr1 (54936171-54935440)
               

               
               1-733, gnl|loxAfr1|scaffold_7811 (13061-12243)
               

               
               1-733, gnl|mm7|chr4 (106031005-106030189)
               

               
               1-733, gnl|Mm7|chr4 (106030254-106030985)
               

               
               1-733, gnl|monDom2|scaffold_40 (21230922-21230109)
               

               
               1-733, gnl|oryCun1|scaffold_909 (5053-4237)
               

               
               1-733, gnl|panTro1|chr1 (53222407-53223226)
               

               
               1-733, gnl|rheMac2|chr1 (57628109-57628928)
               

               
               1-733, gnl|rn3|chr5 (127736544-127735728)
               

               
               1-733, gnl|tetNig1|chr1 (15669706-15668892)
               

               
               1-733, gnl|xenTro1|scaffold_197 (1185833-1185023)

	178-297, + strand, RNAz p=0.808276
	200-319, - strand, RNAz p=0.551475
	360-479, - strand, RNAz p=0.759548

	1-733, gnl\|bosTau2\|chr3 (60373758-60374489)
	1-733, gnl\|canFam2\|chr5 (57401929-57401111)
	1-733, gnl\|danRer3\|chr6 (14261691-14262503)
	1-733, gnl\|dasNov1\|scaffold_21037 (8395-7574)
	1-733, gnl\|echTel1\|scaffold_312114 (8669-9491)
	1-733, gnl\|fr1\|chrUn (247563234-247564048)
	1-733, gnl\|galGal2\|chr8 (25484834-25485653)
	1-733, gnl\|hg17\|chr1 (54935419-54936238)
	1-733, gnl\|Hg17\|chr1 (54936171-54935440)
	1-733, gnl\|loxAfr1\|scaffold_7811 (13061-12243)
	1-733, gnl\|mm7\|chr4 (106031005-106030189)
	1-733, gnl\|Mm7\|chr4 (106030254-106030985)
	1-733, gnl\|monDom2\|scaffold_40 (21230922-21230109)
	1-733, gnl\|oryCun1\|scaffold_909 (5053-4237)
	1-733, gnl\|panTro1\|chr1 (53222407-53223226)
	1-733, gnl\|rheMac2\|chr1 (57628109-57628928)
	1-733, gnl\|rn3\|chr5 (127736544-127735728)
	1-733, gnl\|tetNig1\|chr1 (15669706-15668892)
	1-733, gnl\|xenTro1\|scaffold_197 (1185833-1185023)