Non-Coding RNA Search

Mixc-0038,p05

Sequence:


               
               TTTTTTTTTTGTTGTTGTCATTCCTAATGCATTTAAAAAATCTTGCAGCACATATAAAAG
GAAGTATTACATATTTTAAACTGTATTTGAAAAAGAAAATCTGCATATGAGGCGTATCAA
CTTTTGTAAAACCTGAAGAACTAAATTCAGATTTGGTTAGTACTACTTAAGAGTGAAAAA
TTCAAATAAACATACGAAATTTCCTATAAATTAAAATCTGTAACATTGTCAGTACTAAAA
GAAATTATGTACCATTATTTCATCCCCATCACTGCTTTTGAATTTAATAACAAAAGCATT
TAAAGAAATCCCTGTGGAAAGCTAATTTGAAAGTAAACATGCTTTAAAACTTAAATATAG
ATCTTGTATTAGTCCCACAACAGGATCAAGATCACTATTAAAATAAAGCCTGGGGCACAT
TATGATGCCTAAGATTGGTGGGTGGATTTTAATTGACTTGAAGACTGTCATAGTTCTATT
ATCAGAAAACCTGTAACGCATTTCCAGCATGGAGGACCCATCTGTGCCCACCATCCATCT
GTTTAGACGTGATTGGCAAAATGGTAGGGAACTCGCAGTGGTTGCCTCTGCCTGAAAGGA
ATAAACCACAGGATCTTCCAACGAGTGCCAAAAACTTCTGAGAAGGTCTGCTGCCATGGC
TTTCGGANCCTGGATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGTTGTTGTCATTCCTAATGCATTTAAAAAATCTTGCAGCACATATAAAAG
GAAGTATTACATATTTTAAACTGTATTTGAAAAAGAAAATCTGCATATGAGGCGTATCAA
CTTTTGTAAAACCTGAAGAACTAAATTCAGATTTGGTTAGTACTACTTAAGAGTGAAAAA
TTCAAATAAACATACGAAATTTCCTATAAATTAAAATCTGTAACATTGTCAGTACTAAAA
GAAATTATGTACCATTATTTCATCCCCATCACTGCTTTTGAATTTAATAACAAAAGCATT
TAAAGAAATCCCTGTGGAAAGCTAATTTGAAAGTAAACATGCTTTAAAACTTAAATATAG
ATCTTGTATTAGTCCCACAACAGGATCAAGATCACTATTAAAATAAAGCCTGGGGCACAT
TATGATGCCTAAGATTGGTGGGTGGATTTTAATTGACTTGAAGACTGTCATAGTTCTATT
ATCAGAAAACCTGTAACGCATTTCCAGCATGGAGGACCCATCTGTGCCCACCATCCATCT
GTTTAGACGTGATTGGCAAAATGGTAGGGAACTCGCAGTGGTTGCCTCTGCCTGAAAGGA
ATAAACCACAGGATCTTCCAACGAGTGCCAAAAACTTCTGAGAAGGTCTGCTGCCATGGC
TTTCGGANCCTGGATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874550|ref|XP_611503.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874550|ref|XP_611503.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-420, - strand, RNAz p=0.55701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-420, - strand, RNAz p=0.55701

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_178566, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_178566, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-675, gnl|bosTau2|chr6 (67230197-67230879)
               

               
               1-675, gnl|Hg17|chr9 (14608422-14609096)
               

               
               1-675, gnl|Mm7|chr4 (82209554-82210187)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-675, gnl|bosTau2|chr6 (67230197-67230879)
               

               
               1-675, gnl|Hg17|chr9 (14608422-14609096)
               

               
               1-675, gnl|Mm7|chr4 (82209554-82210187)

	1-675, gnl\|bosTau2\|chr6 (67230197-67230879)
	1-675, gnl\|Hg17\|chr9 (14608422-14609096)
	1-675, gnl\|Mm7\|chr4 (82209554-82210187)