Non-Coding RNA Search

Mixc-0038,p09

Sequence:


               
               CGCACACACACATACACACACACACACACACTCCCTTGGAGCAGAATCGGACTTCTAAAG
GGGGCTGGCTGAGAGGGAAAGACAGGAGACTATGGTGCCCCCACACCCCAATTCCCAGCC
AGGCGCAGCGAAGCTAAAAGAAGGCCCTGGGGAGTGGAGAGAAGTCACTGACCCCTTCTA
TCAGCCATCTGTGAGCTCCCGCCTGACCTAGCTAGCGCAAAGTGGAGGATAAAGGAGGTC
CAGACAGATGGCACAGCGCTTTGGGAAGGAAGGCTCTGTAGGAATGCGAGGGCCGAGGCG
AGGCCCCCCTTTGGGGTGCGTTAAGTTATCTCCTCAGTTCTCAGCCCCCCGCGTATTGCA
GCCACTCGCAATCTATGGCTGAAAGGTGGGCCAAAAAACAGTCGGGGGAGAAGACCCTAC
CCTCTGCCACTTATCTCTCTCATTTGAAAGTCAGAACAGCCCACTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACACACACATACACACACACACACACACTCCCTTGGAGCAGAATCGGACTTCTAAAG
GGGGCTGGCTGAGAGGGAAAGACAGGAGACTATGGTGCCCCCACACCCCAATTCCCAGCC
AGGCGCAGCGAAGCTAAAAGAAGGCCCTGGGGAGTGGAGAGAAGTCACTGACCCCTTCTA
TCAGCCATCTGTGAGCTCCCGCCTGACCTAGCTAGCGCAAAGTGGAGGATAAAGGAGGTC
CAGACAGATGGCACAGCGCTTTGGGAAGGAAGGCTCTGTAGGAATGCGAGGGCCGAGGCG
AGGCCCCCCTTTGGGGTGCGTTAAGTTATCTCCTCAGTTCTCAGCCCCCCGCGTATTGCA
GCCACTCGCAATCTATGGCTGAAAGGTGGGCCAAAAAACAGTCGGGGGAGAAGACCCTAC
CCTCTGCCACTTATCTCTCTCATTTGAAAGTCAGAACAGCCCACTGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               137-334, - strand, RNAz p=0.692164
               

               
               244-429, - strand, RNAz p=0.946049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-334, - strand, RNAz p=0.692164
               

               
               244-429, - strand, RNAz p=0.946049

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               313-450, - strand, RNAmicro p=0.974595

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               313-450, - strand, RNAmicro p=0.974595

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-468, gnl|bosTau2|chr10 (6440495-6440974)
               

               
               3-468, gnl|canFam2|chr30 (34240669-34241568)
               

               
               3-468, gnl|hg17|chr15 (65146340-65147186)
               

               
               3-468, gnl|Hg17|chr15 (65146879-65146388)
               

               
               3-468, gnl|mm7|chr9 (63785383-63784524)
               

               
               3-468, gnl|Mm7|chr9 (63784859-63785326)
               

               
               3-468, gnl|monDom2|scaffold_12 (45345016-45344001)
               

               
               3-468, gnl|panTro1|chr16 (65655998-65656845)
               

               
               3-468, gnl|rheMac2|chr7 (45637483-45638345)
               

               
               3-468, gnl|rn3|chr8 (67969797-67968948)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-468, gnl|bosTau2|chr10 (6440495-6440974)
               

               
               3-468, gnl|canFam2|chr30 (34240669-34241568)
               

               
               3-468, gnl|hg17|chr15 (65146340-65147186)
               

               
               3-468, gnl|Hg17|chr15 (65146879-65146388)
               

               
               3-468, gnl|mm7|chr9 (63785383-63784524)
               

               
               3-468, gnl|Mm7|chr9 (63784859-63785326)
               

               
               3-468, gnl|monDom2|scaffold_12 (45345016-45344001)
               

               
               3-468, gnl|panTro1|chr16 (65655998-65656845)
               

               
               3-468, gnl|rheMac2|chr7 (45637483-45638345)
               

               
               3-468, gnl|rn3|chr8 (67969797-67968948)

	137-334, - strand, RNAz p=0.692164
	244-429, - strand, RNAz p=0.946049

	3-468, gnl\|bosTau2\|chr10 (6440495-6440974)
	3-468, gnl\|canFam2\|chr30 (34240669-34241568)
	3-468, gnl\|hg17\|chr15 (65146340-65147186)
	3-468, gnl\|Hg17\|chr15 (65146879-65146388)
	3-468, gnl\|mm7\|chr9 (63785383-63784524)
	3-468, gnl\|Mm7\|chr9 (63784859-63785326)
	3-468, gnl\|monDom2\|scaffold_12 (45345016-45344001)
	3-468, gnl\|panTro1\|chr16 (65655998-65656845)
	3-468, gnl\|rheMac2\|chr7 (45637483-45638345)
	3-468, gnl\|rn3\|chr8 (67969797-67968948)