Non-Coding RNA Search

Mixc-0039,d12

Sequence:


               
               GGGATCTTGTCTTGAGTTTATCTATTTAATAAGAAATCTGTTTACTAAGAAACCAGGACC
TTGACAGAGATCCAGAAATGATTATAGAATTCTCAGCTTGGGGCTGCCAGTATCCTCAAT
GAGTAGCAGCTAATGCTCCCAAAATGCCCGTGGCCATAACGCCACTTTTTTTTAAAGCAT
GAAAACCTTTCCTTTCAGTTTGACCAATGCCTATTGCACGTTTTAAAAATATACTTTCAT
AAACATAATTCTGGAAAAGCTAGAGTGATGGACATGAAGGTCTGAGTAAAATAAATTAGG
TGTCATATATTACTCTGTTAACACAGAGTAAGAATTTTTTCTTGCACTGCATCTTTTTGA
AGGATCACAAATTTCTGTGCTGCTGTCACTACAGAGCCACTATGCAAGCTTTCTGAGAAA
TTATAAAGGACACACAAAAAGCCTTTGAAGATGAAAGAAGGGAAATGCTGTCCCTATCAC
AGGAAATTAGAGACTGCTGGAATTATAAGGGTACCAGAGCAAATGATCAAACAAGCCATT
ATAATACTGTATAGGTAGCAGTGAACATAGCTTTTAGGAGAACATCTTATTAACTAGGAT
TACGTAGGGTTTTTATATTTAATGACATGAGCAAAGCAGTTTAATACCAATAAGATTGCT
GCGTCCACTTGGTTGAGCAAACACAGAACCGGGATCTAGCTGTCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATCTTGTCTTGAGTTTATCTATTTAATAAGAAATCTGTTTACTAAGAAACCAGGACC
TTGACAGAGATCCAGAAATGATTATAGAATTCTCAGCTTGGGGCTGCCAGTATCCTCAAT
GAGTAGCAGCTAATGCTCCCAAAATGCCCGTGGCCATAACGCCACTTTTTTTTAAAGCAT
GAAAACCTTTCCTTTCAGTTTGACCAATGCCTATTGCACGTTTTAAAAATATACTTTCAT
AAACATAATTCTGGAAAAGCTAGAGTGATGGACATGAAGGTCTGAGTAAAATAAATTAGG
TGTCATATATTACTCTGTTAACACAGAGTAAGAATTTTTTCTTGCACTGCATCTTTTTGA
AGGATCACAAATTTCTGTGCTGCTGTCACTACAGAGCCACTATGCAAGCTTTCTGAGAAA
TTATAAAGGACACACAAAAAGCCTTTGAAGATGAAAGAAGGGAAATGCTGTCCCTATCAC
AGGAAATTAGAGACTGCTGGAATTATAAGGGTACCAGAGCAAATGATCAAACAAGCCATT
ATAATACTGTATAGGTAGCAGTGAACATAGCTTTTAGGAGAACATCTTATTAACTAGGAT
TACGTAGGGTTTTTATATTTAATGACATGAGCAAAGCAGTTTAATACCAATAAGATTGCT
GCGTCCACTTGGTTGAGCAAACACAGAACCGGGATCTAGCTGTCTTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               224-343, + strand, RNAz p=0.63576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-343, + strand, RNAz p=0.63576

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-432, gnl|bosTau2|chr9 (1539100-1539530)
               

               
               1-432, gnl|canFam2|chr12 (36726697-36727116)
               

               
               1-432, gnl|echTel1|scaffold_295987 (111473-111883)
               

               
               1-432, gnl|hg17|chr6 (72107770-72108178)
               

               
               1-432, gnl|Hg17|chr6 (72108272-72107836)
               

               
               1-432, gnl|mm7|chr1 (23544865-23544463)
               

               
               1-432, gnl|Mm7|chr1 (23544379-23544778)
               

               
               1-432, gnl|panTro1|chr5 (73240278-73240687)
               

               
               1-432, gnl|rheMac2|chr4 (67637791-67638198)
               

               
               1-432, gnl|rn3|chr9 (22195366-22194986)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr9 (1539100-1539530)
               

               
               1-432, gnl|canFam2|chr12 (36726697-36727116)
               

               
               1-432, gnl|echTel1|scaffold_295987 (111473-111883)
               

               
               1-432, gnl|hg17|chr6 (72107770-72108178)
               

               
               1-432, gnl|Hg17|chr6 (72108272-72107836)
               

               
               1-432, gnl|mm7|chr1 (23544865-23544463)
               

               
               1-432, gnl|Mm7|chr1 (23544379-23544778)
               

               
               1-432, gnl|panTro1|chr5 (73240278-73240687)
               

               
               1-432, gnl|rheMac2|chr4 (67637791-67638198)
               

               
               1-432, gnl|rn3|chr9 (22195366-22194986)

	1-432, gnl\|bosTau2\|chr9 (1539100-1539530)
	1-432, gnl\|canFam2\|chr12 (36726697-36727116)
	1-432, gnl\|echTel1\|scaffold_295987 (111473-111883)
	1-432, gnl\|hg17\|chr6 (72107770-72108178)
	1-432, gnl\|Hg17\|chr6 (72108272-72107836)
	1-432, gnl\|mm7\|chr1 (23544865-23544463)
	1-432, gnl\|Mm7\|chr1 (23544379-23544778)
	1-432, gnl\|panTro1\|chr5 (73240278-73240687)
	1-432, gnl\|rheMac2\|chr4 (67637791-67638198)
	1-432, gnl\|rn3\|chr9 (22195366-22194986)