Non-Coding RNA Search

Mixc-0040,b23

Sequence:


               
               CAACGCTCTTGGGAGGAGGCGGGGGCCCCTTGAGGTACGGCCTCTCCTTCACCCACTCCA
CCCTCCTTCCCCCCGGGAGCATGGGGATCGTTCTGGGACCTGGACGCTGCGCTTCCGAGG
AAAGCAGGTGGAGCTGGGAGAGGGAGCATCTGCCAAGGAGGTCACGGACCGTGGCTGCAG
TGCGAGGCTGAGCCTCGAGAGCAACAGGGTTGTCTCAGCAGATTACCTGAAGCCGGAGCC
TTTGTGGTTGATGGACACAGTGTGCGGGCAGCCCGCGCCCGAGATGCTTTTGGCCCACTG
GGACATGGCAGCCCTGATACCTGCCTGCCTCTGGGTTGTTCTGCTGGTGTTGGGGGCCAA
CCCAGACAGCAGGGCAGGAGCTGGGTATTAGGGAAACTAGGAAAGTTCCCAGTGGCCACT
ATGTCATAAATAATACAGGGCACAACACCCTGGGGCAGCTTTTGCCCAGAGATACCTGTG
GACCCCTCGCCTCAGTGAGAAAACAGCCCTGGGCCCACTCCCAGCCCTCCAAACAGGTGT
CTCTTGGTCTCAGGACAGAAAACACTCAACATCCATCCAGGATTTTGTCAGCCTGGCACT
CCACAGATTGTTAAAGGGCCAGCTGCTGTCTTACATATTTACACAATAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGCTCTTGGGAGGAGGCGGGGGCCCCTTGAGGTACGGCCTCTCCTTCACCCACTCCA
CCCTCCTTCCCCCCGGGAGCATGGGGATCGTTCTGGGACCTGGACGCTGCGCTTCCGAGG
AAAGCAGGTGGAGCTGGGAGAGGGAGCATCTGCCAAGGAGGTCACGGACCGTGGCTGCAG
TGCGAGGCTGAGCCTCGAGAGCAACAGGGTTGTCTCAGCAGATTACCTGAAGCCGGAGCC
TTTGTGGTTGATGGACACAGTGTGCGGGCAGCCCGCGCCCGAGATGCTTTTGGCCCACTG
GGACATGGCAGCCCTGATACCTGCCTGCCTCTGGGTTGTTCTGCTGGTGTTGGGGGCCAA
CCCAGACAGCAGGGCAGGAGCTGGGTATTAGGGAAACTAGGAAAGTTCCCAGTGGCCACT
ATGTCATAAATAATACAGGGCACAACACCCTGGGGCAGCTTTTGCCCAGAGATACCTGTG
GACCCCTCGCCTCAGTGAGAAAACAGCCCTGGGCCCACTCCCAGCCCTCCAAACAGGTGT
CTCTTGGTCTCAGGACAGAAAACACTCAACATCCATCCAGGATTTTGTCAGCCTGGCACT
CCACAGATTGTTAAAGGGCCAGCTGCTGTCTTACATATTTACACAATAATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               401-595, - strand, RNAz p=0.998964
               

               
               478-595, - strand, RNAz p=0.892823

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-595, - strand, RNAz p=0.998964
               

               
               478-595, - strand, RNAz p=0.892823

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               251-595, gnl|bosTau2|chrX (22944379-22944713)
               

               
               251-595, gnl|canFam2|chrX (62799544-62799835)
               

               
               251-595, gnl|dasNov1|scaffold_79879 (6147-6451)
               

               
               251-595, gnl|echTel1|scaffold_70965 (5029-4762)
               

               
               251-595, gnl|hg17|chrX (76510029-76510313)
               

               
               251-595, gnl|Hg17|chrX (76510028-76510357)
               

               
               251-595, gnl|mm7|chrX (101092610-101092879)
               

               
               251-595, gnl|Mm7|chrX (101092603-101092925)
               

               
               251-595, gnl|monDom2|scaffold_113 (476821-477146)
               

               
               251-595, gnl|oryCun1|scaffold_91019 (1075-785)
               

               
               251-595, gnl|panTro1|chrX (79004130-79004414)
               

               
               251-595, gnl|rheMac2|chrX (76123882-76124166)
               

               
               251-595, gnl|rn3|chrX (93944639-93944906)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-595, gnl|bosTau2|chrX (22944379-22944713)
               

               
               251-595, gnl|canFam2|chrX (62799544-62799835)
               

               
               251-595, gnl|dasNov1|scaffold_79879 (6147-6451)
               

               
               251-595, gnl|echTel1|scaffold_70965 (5029-4762)
               

               
               251-595, gnl|hg17|chrX (76510029-76510313)
               

               
               251-595, gnl|Hg17|chrX (76510028-76510357)
               

               
               251-595, gnl|mm7|chrX (101092610-101092879)
               

               
               251-595, gnl|Mm7|chrX (101092603-101092925)
               

               
               251-595, gnl|monDom2|scaffold_113 (476821-477146)
               

               
               251-595, gnl|oryCun1|scaffold_91019 (1075-785)
               

               
               251-595, gnl|panTro1|chrX (79004130-79004414)
               

               
               251-595, gnl|rheMac2|chrX (76123882-76124166)
               

               
               251-595, gnl|rn3|chrX (93944639-93944906)

	401-595, - strand, RNAz p=0.998964
	478-595, - strand, RNAz p=0.892823

	251-595, gnl\|bosTau2\|chrX (22944379-22944713)
	251-595, gnl\|canFam2\|chrX (62799544-62799835)
	251-595, gnl\|dasNov1\|scaffold_79879 (6147-6451)
	251-595, gnl\|echTel1\|scaffold_70965 (5029-4762)
	251-595, gnl\|hg17\|chrX (76510029-76510313)
	251-595, gnl\|Hg17\|chrX (76510028-76510357)
	251-595, gnl\|mm7\|chrX (101092610-101092879)
	251-595, gnl\|Mm7\|chrX (101092603-101092925)
	251-595, gnl\|monDom2\|scaffold_113 (476821-477146)
	251-595, gnl\|oryCun1\|scaffold_91019 (1075-785)
	251-595, gnl\|panTro1\|chrX (79004130-79004414)
	251-595, gnl\|rheMac2\|chrX (76123882-76124166)
	251-595, gnl\|rn3\|chrX (93944639-93944906)