Non-Coding RNA Search

Mixc-0040,e05

Sequence:


               
               ACACCCAAAACTCGGAGCAGATCAAACTCTACAGAGCCTCCTGGCCAGGAAGAGGACGGA
GCTGGTCGCCAAAATCGAGAGGCTGGAGAACGGGCTGATGAAGCTGCAGAGCACGGCCTC
CCAGGTGGATGATTTAAAAGCCAAGCTGGCCATTCAGGAGGCTGAGCTCAAGCAGAAGAA
TGAGAACGCGGACAAGCTGATCCATGTGGTGGGCGTGGAAACGGAGAAAGTCAGCAAGGA
GAAGGCCATTGCCGACGAGGAGGAGGCCAAGGTGGAGGTTATCAACAAGAATGTCACGGA
GAAACAAAAGGCCTGTGAAACAGACCTGGCCAAGGCAGAGCCAGCCCTGCTGGCCGCACA
GGAGGCCCTGGACACGCTGAATAAGAACAACCTGACGGAGCTGAAGTCCTTCGGATCCCC
CCCGGACGCCGTGGTCAACGTCACGGCCGCTGTCATGATCCTGACCGCACCCGGGGGCAA
GATCCCCAAAGACAAGAGCTGGAAGGCCGCCAAGATCATGATGGGCAAGGTGGACACCTT
CCTGGACTCCTTGAAAAGGTTCGACAAGGAGCACATCCCCGAGGCCTGTCTCAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCCAAAACTCGGAGCAGATCAAACTCTACAGAGCCTCCTGGCCAGGAAGAGGACGGA
GCTGGTCGCCAAAATCGAGAGGCTGGAGAACGGGCTGATGAAGCTGCAGAGCACGGCCTC
CCAGGTGGATGATTTAAAAGCCAAGCTGGCCATTCAGGAGGCTGAGCTCAAGCAGAAGAA
TGAGAACGCGGACAAGCTGATCCATGTGGTGGGCGTGGAAACGGAGAAAGTCAGCAAGGA
GAAGGCCATTGCCGACGAGGAGGAGGCCAAGGTGGAGGTTATCAACAAGAATGTCACGGA
GAAACAAAAGGCCTGTGAAACAGACCTGGCCAAGGCAGAGCCAGCCCTGCTGGCCGCACA
GGAGGCCCTGGACACGCTGAATAAGAACAACCTGACGGAGCTGAAGTCCTTCGGATCCCC
CCCGGACGCCGTGGTCAACGTCACGGCCGCTGTCATGATCCTGACCGCACCCGGGGGCAA
GATCCCCAAAGACAAGAGCTGGAAGGCCGCCAAGATCATGATGGGCAAGGTGGACACCTT
CCTGGACTCCTTGAAAAGGTTCGACAAGGAGCACATCCCCGAGGCCTGTCTCAAAGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5SW62_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SW62_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               171-289, + strand, RNAz p=0.786719
               

               
               384-543, - strand, RNAz p=0.97014

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-289, + strand, RNAz p=0.786719
               

               
               384-543, - strand, RNAz p=0.97014

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK128065, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK128065, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               121-289, gnl|bosTau2|chr19 (45888894-45888726)
               

               
               121-289, gnl|Hg17|chr17 (73969389-73969221)
               

               
               121-289, gnl|Mm7|chr11 (118164945-118164777)
               


               
               384-597, gnl|bosTau2|chr19 (45886976-45886763)
               

               
               384-597, gnl|Hg17|chr17 (73967680-73967467)
               

               
               384-597, gnl|Mm7|chr11 (118161895-118161682)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-289, gnl|bosTau2|chr19 (45888894-45888726)
               

               
               121-289, gnl|Hg17|chr17 (73969389-73969221)
               

               
               121-289, gnl|Mm7|chr11 (118164945-118164777)
               


               
               384-597, gnl|bosTau2|chr19 (45886976-45886763)
               

               
               384-597, gnl|Hg17|chr17 (73967680-73967467)
               

               
               384-597, gnl|Mm7|chr11 (118161895-118161682)

	171-289, + strand, RNAz p=0.786719
	384-543, - strand, RNAz p=0.97014

	121-289, gnl\|bosTau2\|chr19 (45888894-45888726)
	121-289, gnl\|Hg17\|chr17 (73969389-73969221)
	121-289, gnl\|Mm7\|chr11 (118164945-118164777)

	384-597, gnl\|bosTau2\|chr19 (45886976-45886763)
	384-597, gnl\|Hg17\|chr17 (73967680-73967467)
	384-597, gnl\|Mm7\|chr11 (118161895-118161682)