Non-Coding RNA Search

Mixc-0040,p10

Sequence:


               
               GGGGCTTCGGAATGGGGGACTTTACTGGCTCCAGAACCCAAGCCTGGGAACGGCCAGGCT
GCCTCAGTCTGGGCAGCCCAGGTTGCCCAGCGCCCACCCACTGGTGACTCAGGGACCCCA
GGCCCACCCCCCTCTTCCCACCGACCCTTCGAGGACATTCACCCTTTGCTCTCAGAACCT
TGGGGAAGGCGGCTGGACTGTTGGGGGGGGTGGGCATCTTGGGGTTCTGGGGGGGCCGGT
GGTTAGCTTGGGGGGCGGGAGGGGGGTGCGTTTCTTCTGCATGACTGTGGAGTCTGTTGC
TCATGACTTTCTTTTGTAAATATCCATAAAGGGAGAGATGGAGGCACCAAACCCACCTTC
TGCCATTTGTACCTGCAGGACGAGTTGTCCCTCGCTGTGCATCCGTCCCCCTCCCCACCC
GTCAGGCCAGCCCCTTCCCCTGCCCAGCTGGCTGACGGCTGGGGGCCCTCAGAGCCAGCT
GTCCTGGCTCCTGGATAGCGCTGGGTTTGGGTGCAGGAGTGGGACACCCGGGAGTAGGAG
GAGGGCCCTCCCTCCCTGTGGTCCCTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCTTCGGAATGGGGGACTTTACTGGCTCCAGAACCCAAGCCTGGGAACGGCCAGGCT
GCCTCAGTCTGGGCAGCCCAGGTTGCCCAGCGCCCACCCACTGGTGACTCAGGGACCCCA
GGCCCACCCCCCTCTTCCCACCGACCCTTCGAGGACATTCACCCTTTGCTCTCAGAACCT
TGGGGAAGGCGGCTGGACTGTTGGGGGGGGTGGGCATCTTGGGGTTCTGGGGGGGCCGGT
GGTTAGCTTGGGGGGCGGGAGGGGGGTGCGTTTCTTCTGCATGACTGTGGAGTCTGTTGC
TCATGACTTTCTTTTGTAAATATCCATAAAGGGAGAGATGGAGGCACCAAACCCACCTTC
TGCCATTTGTACCTGCAGGACGAGTTGTCCCTCGCTGTGCATCCGTCCCCCTCCCCACCC
GTCAGGCCAGCCCCTTCCCCTGCCCAGCTGGCTGACGGCTGGGGGCCCTCAGAGCCAGCT
GTCCTGGCTCCTGGATAGCGCTGGGTTTGGGTGCAGGAGTGGGACACCCGGGAGTAGGAG
GAGGGCCCTCCCTCCCTGTGGTCCCTCTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               23-138, - strand, RNAz p=0.64504
               

               
               375-561, - strand, RNAz p=0.987545

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-138, - strand, RNAz p=0.64504
               

               
               375-561, - strand, RNAz p=0.987545

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               518-580, - strand, RNAmicro p=0.995894
               

               
               46-214, - strand, RNAmicro p=0.993102

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               518-580, - strand, RNAmicro p=0.995894
               

               
               46-214, - strand, RNAmicro p=0.993102

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               23-570, gnl|bosTau2|chr5 (68070659-68071187)
               

               
               23-570, gnl|canFam2|chr10 (29421447-29420828)
               

               
               23-570, gnl|echTel1|scaffold_173086 (7855-8458)
               

               
               23-570, gnl|galGal2|chr1 (47640639-47639953)
               

               
               23-570, gnl|hg17|chr22 (37146557-37147195)
               

               
               23-570, gnl|Hg17|chr22 (37147147-37146602)
               

               
               23-570, gnl|loxAfr1|scaffold_17836 (45819-46460)
               

               
               23-570, gnl|mm7|chr15 (79567874-79568464)
               

               
               23-570, gnl|Mm7|chr15 (79568419-79567901)
               

               
               23-570, gnl|monDom2|scaffold_434 (35644-36289)
               

               
               23-570, gnl|panTro1|chr23 (37370215-37370864)
               

               
               23-570, gnl|rn3|chr7 (117635982-117636568)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-570, gnl|bosTau2|chr5 (68070659-68071187)
               

               
               23-570, gnl|canFam2|chr10 (29421447-29420828)
               

               
               23-570, gnl|echTel1|scaffold_173086 (7855-8458)
               

               
               23-570, gnl|galGal2|chr1 (47640639-47639953)
               

               
               23-570, gnl|hg17|chr22 (37146557-37147195)
               

               
               23-570, gnl|Hg17|chr22 (37147147-37146602)
               

               
               23-570, gnl|loxAfr1|scaffold_17836 (45819-46460)
               

               
               23-570, gnl|mm7|chr15 (79567874-79568464)
               

               
               23-570, gnl|Mm7|chr15 (79568419-79567901)
               

               
               23-570, gnl|monDom2|scaffold_434 (35644-36289)
               

               
               23-570, gnl|panTro1|chr23 (37370215-37370864)
               

               
               23-570, gnl|rn3|chr7 (117635982-117636568)

	23-138, - strand, RNAz p=0.64504
	375-561, - strand, RNAz p=0.987545

	518-580, - strand, RNAmicro p=0.995894
	46-214, - strand, RNAmicro p=0.993102

	23-570, gnl\|bosTau2\|chr5 (68070659-68071187)
	23-570, gnl\|canFam2\|chr10 (29421447-29420828)
	23-570, gnl\|echTel1\|scaffold_173086 (7855-8458)
	23-570, gnl\|galGal2\|chr1 (47640639-47639953)
	23-570, gnl\|hg17\|chr22 (37146557-37147195)
	23-570, gnl\|Hg17\|chr22 (37147147-37146602)
	23-570, gnl\|loxAfr1\|scaffold_17836 (45819-46460)
	23-570, gnl\|mm7\|chr15 (79567874-79568464)
	23-570, gnl\|Mm7\|chr15 (79568419-79567901)
	23-570, gnl\|monDom2\|scaffold_434 (35644-36289)
	23-570, gnl\|panTro1\|chr23 (37370215-37370864)
	23-570, gnl\|rn3\|chr7 (117635982-117636568)