Non-Coding RNA Search

Mixc-0042,a24

Sequence:


               
               GGCAAAGCTAGGCTAGGTCTTGGAGGCTGGTGTAAGGCGAAGCGGGTGAAGGCAGGAGGC
TGATGGAGAGACTGAGGGGAATAAAAGCCGAAATGGATTCACGGTGCCTTGGATGGAGGA
CGAGAGGGGAATTGCAAGCTCCTTCAACTCGTTCTGTCCGGTGAGAAGTGATCAAGCTTG
GGCTGACAAGAGGCTCAGGGAGCCCTCACGTTCTTTCGCTTTTTTACCTGCCAATCAAAC
TGCTACAAGACAACACCCTGATCTGGCATGGACATCCCCCGGCTTTGTAGTCAAGTGCAT
TTTAGCCACAAAGATCCCAACAAGAGAGTGGAAGGAAACTTAGACGGGGCTTTGTTTGAC
TCCATGTAGCGACAACAAGAGAAACAAAACTACCTATTTGTAACGGACGTGCTGCCATTG
CTCCGCGCATTGAGCGCCTACCTATTGAAATCTTTACATCGGGACAATGGGAAAGCGGCT
AAAATTACCCTCATGGGTCCTGGGAGGGCAAGATTCCTGAGCCCCTACTCCCGCCCCCAT
CCCTTCCTCCTCCAGCCCGAGCCTTGAGGGGGCTTCCCCCCTTCCCCAGTCCTGGTCGCC
TTCCTCCAGCCAGCCCGGCCTGCACCTGTGCCTGAAGAACACTCCCAAGCCTGGAGCCCC
CTCCGAGCGCAGCCCCAGCCCCTGGCGGCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAAGCTAGGCTAGGTCTTGGAGGCTGGTGTAAGGCGAAGCGGGTGAAGGCAGGAGGC
TGATGGAGAGACTGAGGGGAATAAAAGCCGAAATGGATTCACGGTGCCTTGGATGGAGGA
CGAGAGGGGAATTGCAAGCTCCTTCAACTCGTTCTGTCCGGTGAGAAGTGATCAAGCTTG
GGCTGACAAGAGGCTCAGGGAGCCCTCACGTTCTTTCGCTTTTTTACCTGCCAATCAAAC
TGCTACAAGACAACACCCTGATCTGGCATGGACATCCCCCGGCTTTGTAGTCAAGTGCAT
TTTAGCCACAAAGATCCCAACAAGAGAGTGGAAGGAAACTTAGACGGGGCTTTGTTTGAC
TCCATGTAGCGACAACAAGAGAAACAAAACTACCTATTTGTAACGGACGTGCTGCCATTG
CTCCGCGCATTGAGCGCCTACCTATTGAAATCTTTACATCGGGACAATGGGAAAGCGGCT
AAAATTACCCTCATGGGTCCTGGGAGGGCAAGATTCCTGAGCCCCTACTCCCGCCCCCAT
CCCTTCCTCCTCCAGCCCGAGCCTTGAGGGGGCTTCCCCCCTTCCCCAGTCCTGGTCGCC
TTCCTCCAGCCAGCCCGGCCTGCACCTGTGCCTGAAGAACACTCCCAAGCCTGGAGCCCC
CTCCGAGCGCAGCCCCAGCCCCTGGCGGCAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34856817|ref|XP_347012.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34856817|ref|XP_347012.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               550-689, - strand, RNAz p=0.999294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               550-689, - strand, RNAz p=0.999294

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               273-689, gnl|bosTau2|chr1 (55835379-55835804)
               

               
               273-689, gnl|Hg17|chr3 (182910853-182911270)
               

               
               273-689, gnl|Mm7|chr3 (34455909-34456296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-689, gnl|bosTau2|chr1 (55835379-55835804)
               

               
               273-689, gnl|Hg17|chr3 (182910853-182911270)
               

               
               273-689, gnl|Mm7|chr3 (34455909-34456296)

	273-689, gnl\|bosTau2\|chr1 (55835379-55835804)
	273-689, gnl\|Hg17\|chr3 (182910853-182911270)
	273-689, gnl\|Mm7\|chr3 (34455909-34456296)