Non-Coding RNA Search

Mixc-0042,i05

Sequence:


               
               TTTTTTTTTTAGCTGCTAGTGTTTGTATTTTTTTCTCTAGGCAGCCCCGTAAAGCAGGTC
TTTGCTGGGCATGCTATTTACACGGTGGAAAGAAGACGCCAGCTCCTGACTGGGGGAAAG
CGGCCTGGGGGCTGGGGCGGGGCGGGGCCCGTGTGCTGGGCTTCACTTCTGGACACAGAG
GACCCCCCCGAGGATGCCGGGACAGCTCCTCTGGGGTGTGGCTTGGTCCGTCCTAGGCCA
GGACCCACCTTCGACACACCTCCGAAGGCTTCTGTAGTGATGGCGAGAGAGCGTCCAGCC
GCGGGGGGCGGGCGGGGCTGGCGATGGCGGGGCTGCGTCCTCTGGGCTCAGTTGTTGTCT
CTGGTGTCCGAGGAGGCACTTCCAAACAAGATGTCACTGTCGTGGGACATGCTGCTCAGC
GGCGACTTGGTTTTGAGGAGGAACTGGGTCCTGCGGAACATCAGCCTCTCCTGCTCCTGC
TTGAGCTCCAGGTAGGAGCGGGAGAAGGTGTGGAAGATGGANGTCACCCGGGAGGCCATG
AGGAGGATGCCGCTCANGATGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTAGCTGCTAGTGTTTGTATTTTTTTCTCTAGGCAGCCCCGTAAAGCAGGTC
TTTGCTGGGCATGCTATTTACACGGTGGAAAGAAGACGCCAGCTCCTGACTGGGGGAAAG
CGGCCTGGGGGCTGGGGCGGGGCGGGGCCCGTGTGCTGGGCTTCACTTCTGGACACAGAG
GACCCCCCCGAGGATGCCGGGACAGCTCCTCTGGGGTGTGGCTTGGTCCGTCCTAGGCCA
GGACCCACCTTCGACACACCTCCGAAGGCTTCTGTAGTGATGGCGAGAGAGCGTCCAGCC
GCGGGGGGCGGGCGGGGCTGGCGATGGCGGGGCTGCGTCCTCTGGGCTCAGTTGTTGTCT
CTGGTGTCCGAGGAGGCACTTCCAAACAAGATGTCACTGTCGTGGGACATGCTGCTCAGC
GGCGACTTGGTTTTGAGGAGGAACTGGGTCCTGCGGAACATCAGCCTCTCCTGCTCCTGC
TTGAGCTCCAGGTAGGAGCGGGAGAAGGTGTGGAAGATGGANGTCACCCGGGAGGCCATG
AGGAGGATGCCGCTCANGATGCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               418-565, + strand, RNAz p=0.971134

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-565, + strand, RNAz p=0.971134

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               446-532, + strand, RNAmicro p=0.976329

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               446-532, + strand, RNAmicro p=0.976329

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               301-565, gnl|bosTau2|chr13 (59043173-59042907)
               

               
               301-565, gnl|Hg17|chr20 (49053966-49054197)
               

               
               301-565, gnl|Mm7|chr2 (168055023-168055251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               301-565, gnl|bosTau2|chr13 (59043173-59042907)
               

               
               301-565, gnl|Hg17|chr20 (49053966-49054197)
               

               
               301-565, gnl|Mm7|chr2 (168055023-168055251)

	301-565, gnl\|bosTau2\|chr13 (59043173-59042907)
	301-565, gnl\|Hg17\|chr20 (49053966-49054197)
	301-565, gnl\|Mm7\|chr2 (168055023-168055251)