Non-Coding RNA Search

Mixc-0042,n15

Sequence:


               
               GAATCTCCGGGTAGGCGAGCACAGGGAGAGCTGCCCAACCCCGGGAGCCGGAAAGGGCAG
AGGGAGAGCGGCCACCACCCGACAGTCTCACTCTGCCTTGGGGAGACAGGCTGCTCTACT
TCTGAAGAACAGAAAGCCTTCCCTTGGGTCTCAGGGACTGGGTTTAGGAGGTTCTGGCCA
GGCCACATGGGGAGGGGGAAGGAAGACAGGGAGGGCGGAGGCGGGCCGAGGGCTGCTTCA
GTGCCAACATTCTCAGGTGGTGCTAACGTGTTTCCCACAACCCCCCAGGGCTCTATAGCC
TCTGCAGGGCGGATGTTTCCTGCCCTTTGTTTCCACCCTCATCTGGCACTAAGACACTGG
GGACTGGGAGGGAAGGCCCAGTGGAACATCTTGGCATGGATGTCAGAGGTGGCTTGGCAG
GCAGACTGCCAGTCTGGCAGCTTTTCCAGAGGACAGGGTTCCCAAATGTGCTCCAAGTGG
CTGCTGAGAACGGGAAGTGGAAAAGCCTGGGCTTCCAATCACCTCCTCGACCCTCTCCCT
CCACAGGACAGCTCTTGGCAATATTAGCTCTATCAGTTATCTCCTGAGACTGACCCACCA
CAGGGCTCCAAGAACCAGGGGTGCCTTACACAGTCCCCTGGGCTCTTCTGGGCCTGAGGG
GGGAAGCAAGCTAGCTGGGTCCCGAGATGCTGACCCTGTACCAGCACAATGACCAGACAG
TGGTAAGGGGCCCAGTGGCAGCAATCACAGGCATGAGCCAAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCTCCGGGTAGGCGAGCACAGGGAGAGCTGCCCAACCCCGGGAGCCGGAAAGGGCAG
AGGGAGAGCGGCCACCACCCGACAGTCTCACTCTGCCTTGGGGAGACAGGCTGCTCTACT
TCTGAAGAACAGAAAGCCTTCCCTTGGGTCTCAGGGACTGGGTTTAGGAGGTTCTGGCCA
GGCCACATGGGGAGGGGGAAGGAAGACAGGGAGGGCGGAGGCGGGCCGAGGGCTGCTTCA
GTGCCAACATTCTCAGGTGGTGCTAACGTGTTTCCCACAACCCCCCAGGGCTCTATAGCC
TCTGCAGGGCGGATGTTTCCTGCCCTTTGTTTCCACCCTCATCTGGCACTAAGACACTGG
GGACTGGGAGGGAAGGCCCAGTGGAACATCTTGGCATGGATGTCAGAGGTGGCTTGGCAG
GCAGACTGCCAGTCTGGCAGCTTTTCCAGAGGACAGGGTTCCCAAATGTGCTCCAAGTGG
CTGCTGAGAACGGGAAGTGGAAAAGCCTGGGCTTCCAATCACCTCCTCGACCCTCTCCCT
CCACAGGACAGCTCTTGGCAATATTAGCTCTATCAGTTATCTCCTGAGACTGACCCACCA
CAGGGCTCCAAGAACCAGGGGTGCCTTACACAGTCCCCTGGGCTCTTCTGGGCCTGAGGG
GGGAAGCAAGCTAGCTGGGTCCCGAGATGCTGACCCTGTACCAGCACAATGACCAGACAG
TGGTAAGGGGCCCAGTGGCAGCAATCACAGGCATGAGCCAAGGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               65-342, + strand, RNAz p=0.969696

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-342, + strand, RNAz p=0.969696

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               26-576, gnl|bosTau2|chr19 (17623813-17624363)
               

               
               26-576, gnl|Hg17|chr17 (1917548-1918087)
               

               
               26-576, gnl|Mm7|chr11 (75239107-75238573)
               


               
               581-765, gnl|bosTau2|chr19 (17624389-17624587)
               

               
               581-765, gnl|Hg17|chr17 (1918105-1918306)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-576, gnl|bosTau2|chr19 (17623813-17624363)
               

               
               26-576, gnl|Hg17|chr17 (1917548-1918087)
               

               
               26-576, gnl|Mm7|chr11 (75239107-75238573)
               


               
               581-765, gnl|bosTau2|chr19 (17624389-17624587)
               

               
               581-765, gnl|Hg17|chr17 (1918105-1918306)

	26-576, gnl\|bosTau2\|chr19 (17623813-17624363)
	26-576, gnl\|Hg17\|chr17 (1917548-1918087)
	26-576, gnl\|Mm7\|chr11 (75239107-75238573)

	581-765, gnl\|bosTau2\|chr19 (17624389-17624587)
	581-765, gnl\|Hg17\|chr17 (1918105-1918306)