Non-Coding RNA Search

Mixc-0042,o10

Sequence:


               
               TGTTGGCCTTACCAATAAGAGATGGCCTTTCTCACATTCAGAGATACAGATGTGCATGGA
ATACAAGTGGGGCTTATGGACAGAGAGACGCTTGTGTGGAAGTGACTATTCGGAGTGCAC
AGCTGAAAACCACCAGCAGAAAGAGCTTCCTGCAGTCATGCAGCAGAGTGAGGCTGCCCA
TAGCCTTAGCCTCTGCATTGTTTTTCTGCCTGCCAGGAGAAAACATCTGTGAATTATTTG
AATGGAACCTTATACTGGAGATCATCTGAATTGGTGTCATCTCTGTTTAATTTCAGGAAA
TGATGTCACAATGCATTAAATAACAATGCTGGGTGATTTATTTTCCTGTGGACATGCTGT
CCTAAGCATTCCTCTTCTCTTGCAGTGTTTCCAATTAACTGTAAGCCTGAGTGTTCTTCC
TATTTCATAATGATTTTGAGGGGTGGGGGCGGGAGATTGGGGTGGGAAGAGTAGTAATTT
CAGAGGTTGCCGAGGTTCATAGCTAATGGCACATCCATCATGTTCTTATTGGGACAGGAG
GGTTCTGAACGTCAGGGCCGTGATCACCACTGGCAGCCTATAACCGTCTTGGTTTTAAAG
AATGTCGAACACAGAAAGCCAGAACGTTCTGATCTTAGCTGTCCAAAGAGCCACTAGATA
ATTTTAATAGCGACCTGCAGACTGTGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGCCTTACCAATAAGAGATGGCCTTTCTCACATTCAGAGATACAGATGTGCATGGA
ATACAAGTGGGGCTTATGGACAGAGAGACGCTTGTGTGGAAGTGACTATTCGGAGTGCAC
AGCTGAAAACCACCAGCAGAAAGAGCTTCCTGCAGTCATGCAGCAGAGTGAGGCTGCCCA
TAGCCTTAGCCTCTGCATTGTTTTTCTGCCTGCCAGGAGAAAACATCTGTGAATTATTTG
AATGGAACCTTATACTGGAGATCATCTGAATTGGTGTCATCTCTGTTTAATTTCAGGAAA
TGATGTCACAATGCATTAAATAACAATGCTGGGTGATTTATTTTCCTGTGGACATGCTGT
CCTAAGCATTCCTCTTCTCTTGCAGTGTTTCCAATTAACTGTAAGCCTGAGTGTTCTTCC
TATTTCATAATGATTTTGAGGGGTGGGGGCGGGAGATTGGGGTGGGAAGAGTAGTAATTT
CAGAGGTTGCCGAGGTTCATAGCTAATGGCACATCCATCATGTTCTTATTGGGACAGGAG
GGTTCTGAACGTCAGGGCCGTGATCACCACTGGCAGCCTATAACCGTCTTGGTTTTAAAG
AATGTCGAACACAGAAAGCCAGAACGTTCTGATCTTAGCTGTCCAAAGAGCCACTAGATA
ATTTTAATAGCGACCTGCAGACTGTGGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-396, - strand, RNAz p=0.966945
               

               
               476-591, + strand, RNAz p=0.552482

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-396, - strand, RNAz p=0.966945
               

               
               476-591, + strand, RNAz p=0.552482

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-690, gnl|bosTau2|chr10 (18733922-18733237)
               

               
               8-690, gnl|Hg17|chr15 (35108832-35108150)
               

               
               8-690, gnl|Mm7|chr2 (115735473-115734781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-690, gnl|bosTau2|chr10 (18733922-18733237)
               

               
               8-690, gnl|Hg17|chr15 (35108832-35108150)
               

               
               8-690, gnl|Mm7|chr2 (115735473-115734781)

	119-396, - strand, RNAz p=0.966945
	476-591, + strand, RNAz p=0.552482

	8-690, gnl\|bosTau2\|chr10 (18733922-18733237)
	8-690, gnl\|Hg17\|chr15 (35108832-35108150)
	8-690, gnl\|Mm7\|chr2 (115735473-115734781)