Non-Coding RNA Search

Mixc-0042,p05

Sequence:


               
               GCTTTATTAAACTTTGCGAGGGACTTCATCACAGCTAATGGCTCCTGCCTGCTTGCATTT
GTCTCCATGTCCGTTCTCCCCAGGAGCTTCATAGGAAGACTGCCCTTTGATGAGGTGTCC
CTGAGATGATAGCTGGAGCTTCTAATCTCTCAACCGTTAAGTGAGTGATGAAGTCCACCC
CATAAACCTTAGTAAGACCTTATTGTACCACAGTTGTTGAGACCAGCCCTCATGCCCCAA
GGGCTTCTCACCACCACCAGTGGTTCAGCCATGATGGCAACCTGTGGCATTAGCAAGAGC
TTCTGCCATGACTCCAAAACATGTGACCATCTACCAGTGTCTCTGGTCTGAGCAAGTTTT
CTGCCAAACCTACCCTCAAATTTAGTTCTGTCTGCCTTCTAGACAATGGCTGAGAGTTTG
CATGATAATCTGGGGAGCCTTTGCCTGATGCTCCTTCCATCAGTTTAGGTGAGTGGGGGC
ACCATAGGCCATAGCTACTCTTGTCCCCAGCATGGCCTCAGGAAAACTGTTGTCCATAGA
CAGACACTGCCCCCTGGTGTAAAGCAGATGAAGCTGCAAATCTATCAGCCCCTCAGATTT
CCATCTGGGAAGCATGTGGAGATCCAGGAAGCCTCANGAAGGTTTAGGGAGCTCCTTTGG
GCCATGAAACATCTCAAGAGCTGGGAGCCACTGGCCTGACCGCACCCAAGCTCCCAGCAG
CATGCCACCCACTGCTGCTTGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTATTAAACTTTGCGAGGGACTTCATCACAGCTAATGGCTCCTGCCTGCTTGCATTT
GTCTCCATGTCCGTTCTCCCCAGGAGCTTCATAGGAAGACTGCCCTTTGATGAGGTGTCC
CTGAGATGATAGCTGGAGCTTCTAATCTCTCAACCGTTAAGTGAGTGATGAAGTCCACCC
CATAAACCTTAGTAAGACCTTATTGTACCACAGTTGTTGAGACCAGCCCTCATGCCCCAA
GGGCTTCTCACCACCACCAGTGGTTCAGCCATGATGGCAACCTGTGGCATTAGCAAGAGC
TTCTGCCATGACTCCAAAACATGTGACCATCTACCAGTGTCTCTGGTCTGAGCAAGTTTT
CTGCCAAACCTACCCTCAAATTTAGTTCTGTCTGCCTTCTAGACAATGGCTGAGAGTTTG
CATGATAATCTGGGGAGCCTTTGCCTGATGCTCCTTCCATCAGTTTAGGTGAGTGGGGGC
ACCATAGGCCATAGCTACTCTTGTCCCCAGCATGGCCTCAGGAAAACTGTTGTCCATAGA
CAGACACTGCCCCCTGGTGTAAAGCAGATGAAGCTGCAAATCTATCAGCCCCTCAGATTT
CCATCTGGGAAGCATGTGGAGATCCAGGAAGCCTCANGAAGGTTTAGGGAGCTCCTTTGG
GCCATGAAACATCTCAAGAGCTGGGAGCCACTGGCCTGACCGCACCCAAGCTCCCAGCAG
CATGCCACCCACTGCTGCTTGACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-352, - strand, RNAz p=0.999998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-352, - strand, RNAz p=0.999998

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               211-306, - strand, RNAmicro p=0.999626

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               211-306, - strand, RNAmicro p=0.999626

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-643, gnl|bosTau2|chr3 (22834542-22835192)
               

               
               1-643, gnl|Hg17|chr1 (116235687-116236335)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-643, gnl|bosTau2|chr3 (22834542-22835192)
               

               
               1-643, gnl|Hg17|chr1 (116235687-116236335)

	1-643, gnl\|bosTau2\|chr3 (22834542-22835192)
	1-643, gnl\|Hg17\|chr1 (116235687-116236335)