Non-Coding RNA Search

Mixc-0044,d10

Sequence:


               
               TTTTTTTTTTAATGAGCTCCCCGGGCGTCTGCAGCGGGCAGGACGCAGAAAGGCAGGCCC
AGGCTGTGGAGGCCCGAGGCCCCAGCCCTGCCCCGAGCCCTGGCCCCCCCACCCTTCTGG
GCATGAGAGGGCGGCCCCGGGGCTCTGCAGCCCCCGGGCCGGGCAGGGCTCTCCATGCAG
CTGGTGCTGAAGATGGATTCAGCCCAGACAATGACAGCTGGTTGGAGGATCAGTGGGAGC
GCTGGCTCACCCATGACATCAGCCTGGATGAGTTTGAAGATGAAGACCTTTCCCAGATCA
CTGATGAGTGTGGCATCAGCCTGCACTGCAAAGACACCCTGTCCTTACGGCCCCCACGCG
CCGGGCTGCTGTCTGGGGGCGGCGGCGGCAGCGGCTGCATCGGCGGCGGGGGGAGCCTGC
TGCACGCGGAGATGCTGCAGATGGACTTGATCCACTCGACGGGGGACACTCCCGGCGCGG
AGGACGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTAATGAGCTCCCCGGGCGTCTGCAGCGGGCAGGACGCAGAAAGGCAGGCCC
AGGCTGTGGAGGCCCGAGGCCCCAGCCCTGCCCCGAGCCCTGGCCCCCCCACCCTTCTGG
GCATGAGAGGGCGGCCCCGGGGCTCTGCAGCCCCCGGGCCGGGCAGGGCTCTCCATGCAG
CTGGTGCTGAAGATGGATTCAGCCCAGACAATGACAGCTGGTTGGAGGATCAGTGGGAGC
GCTGGCTCACCCATGACATCAGCCTGGATGAGTTTGAAGATGAAGACCTTTCCCAGATCA
CTGATGAGTGTGGCATCAGCCTGCACTGCAAAGACACCCTGTCCTTACGGCCCCCACGCG
CCGGGCTGCTGTCTGGGGGCGGCGGCGGCAGCGGCTGCATCGGCGGCGGGGGGAGCCTGC
TGCACGCGGAGATGCTGCAGATGGACTTGATCCACTCGACGGGGGACACTCCCGGCGCGG
AGGACGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-245, - strand, RNAz p=0.994382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-245, - strand, RNAz p=0.994382

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               111-245, BY740604 RIKEN full-length enriched, 13 days embryo liver Mus 
(dbj|BY740604.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ165493 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ165493.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ167107 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ167107.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ167589 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ167589.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ169706 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ169706.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, oc41c06.y1 No3 mouse (cataract/retinal degeneration) whole eye, 
(gb|CX733270.1|), blast E-value=3.9937e-43, identity=92.65%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               111-245, BY740604 RIKEN full-length enriched, 13 days embryo liver Mus 
(dbj|BY740604.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ165493 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ165493.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ167107 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ167107.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ167589 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ167589.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, CJ169706 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ169706.1|), blast E-value=3.9937e-43, identity=92.65% 
               

               
               111-245, oc41c06.y1 No3 mouse (cataract/retinal degeneration) whole eye, 
(gb|CX733270.1|), blast E-value=3.9937e-43, identity=92.65%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-245, gnl|bosTau2|chr15 (47717930-47718174)
               

               
               6-245, gnl|Hg17|chr11 (45874837-45875078)
               

               
               6-245, gnl|Mm7|chr2 (92243112-92242872)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-245, gnl|bosTau2|chr15 (47717930-47718174)
               

               
               6-245, gnl|Hg17|chr11 (45874837-45875078)
               

               
               6-245, gnl|Mm7|chr2 (92243112-92242872)

	111-245, BY740604 RIKEN full-length enriched, 13 days embryo liver Mus (dbj\|BY740604.1\|), blast E-value=3.9937e-43, identity=92.65%
	111-245, CJ165493 RIKEN full-length enriched mouse cDNA library, Rathke's (dbj\|CJ165493.1\|), blast E-value=3.9937e-43, identity=92.65%
	111-245, CJ167107 RIKEN full-length enriched mouse cDNA library, Rathke's (dbj\|CJ167107.1\|), blast E-value=3.9937e-43, identity=92.65%
	111-245, CJ167589 RIKEN full-length enriched mouse cDNA library, Rathke's (dbj\|CJ167589.1\|), blast E-value=3.9937e-43, identity=92.65%
	111-245, CJ169706 RIKEN full-length enriched mouse cDNA library, Rathke's (dbj\|CJ169706.1\|), blast E-value=3.9937e-43, identity=92.65%
	111-245, oc41c06.y1 No3 mouse (cataract/retinal degeneration) whole eye, (gb\|CX733270.1\|), blast E-value=3.9937e-43, identity=92.65%

	6-245, gnl\|bosTau2\|chr15 (47717930-47718174)
	6-245, gnl\|Hg17\|chr11 (45874837-45875078)
	6-245, gnl\|Mm7\|chr2 (92243112-92242872)