Non-Coding RNA Search

Mixg-0006h07

Sequence:


               
               ATAGTCTGTTGGGAGGCATCACAGTGGTTGGTTGTTCTACCGAAGGTGTGACAGCAGTCG
CCACTTCCCCTAGTACCAACGGAACTTCTCCAGTGACGGAAAAGCCACCAGAAAAGGAAG
CAGAAAATAGTGAGGTTGATGAAAATGTTCCAACAGCAGAAGAAGCAACTGAAGCCACAG
AAGGCAATGCAGGGTCAGCTGAAGATACTGTGGACATCTCCCAAGCTGGCGTGTACACAG
AGCATGTTTTTACAGATCCTTTGGGAGTTCAAATCCCAGAAGACCTCTCACCAGTGTATC
AGTCAAGTAATGACTCAGATGCATATAAAGATCAAATATCAGTATTGCCAAATGAACAAG
ACCTGGTGAGGGAAGAAGCCCAGAAAATGAGTAGCCTTTTACCAACTATGTGGCTCGGAG
CTCAGAATGGCTGTTTGTATGTCCATTCATCTGTAGCCCAGTGGAGGAAATGTCTCCATT
CTATTAAACTTAAAGATTCGATTCTCAGTATTGTACATGTGAAAGGAATTGTGTTAGTGG
CCCTGGCTGATGGTACCCTTGCAATCTTTCACAGAGGAGTTGATGGGCAGTGGGATTTGT
NCAACTATCACTTGTTAGATCTTGGACGACCTCACCATTCCATTCGATGCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTCTGTTGGGAGGCATCACAGTGGTTGGTTGTTCTACCGAAGGTGTGACAGCAGTCG
CCACTTCCCCTAGTACCAACGGAACTTCTCCAGTGACGGAAAAGCCACCAGAAAAGGAAG
CAGAAAATAGTGAGGTTGATGAAAATGTTCCAACAGCAGAAGAAGCAACTGAAGCCACAG
AAGGCAATGCAGGGTCAGCTGAAGATACTGTGGACATCTCCCAAGCTGGCGTGTACACAG
AGCATGTTTTTACAGATCCTTTGGGAGTTCAAATCCCAGAAGACCTCTCACCAGTGTATC
AGTCAAGTAATGACTCAGATGCATATAAAGATCAAATATCAGTATTGCCAAATGAACAAG
ACCTGGTGAGGGAAGAAGCCCAGAAAATGAGTAGCCTTTTACCAACTATGTGGCTCGGAG
CTCAGAATGGCTGTTTGTATGTCCATTCATCTGTAGCCCAGTGGAGGAAATGTCTCCATT
CTATTAAACTTAAAGATTCGATTCTCAGTATTGTACATGTGAAAGGAATTGTGTTAGTGG
CCCTGGCTGATGGTACCCTTGCAATCTTTCACAGAGGAGTTGATGGGCAGTGGGATTTGT
NCAACTATCACTTGTTAGATCTTGGACGACCTCACCATTCCATTCGATGCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55646591|ref|XP_511886.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55646591|ref|XP_511886.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-306, - strand, RNAz p=0.54562

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-306, - strand, RNAz p=0.54562

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-306, gnl|bosTau2|chr16 (11945539-11945339)
               

               
               110-306, gnl|Hg17|chr17 (46422234-46422038)
               

               
               110-306, gnl|Mm7|chr11 (94206718-94206914)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-306, gnl|bosTau2|chr16 (11945539-11945339)
               

               
               110-306, gnl|Hg17|chr17 (46422234-46422038)
               

               
               110-306, gnl|Mm7|chr11 (94206718-94206914)

	110-306, gnl\|bosTau2\|chr16 (11945539-11945339)
	110-306, gnl\|Hg17\|chr17 (46422234-46422038)
	110-306, gnl\|Mm7\|chr11 (94206718-94206914)