Non-Coding RNA Search

Mixg-0007h02

Sequence:


               
               CCTTGGCCCATCCAGGATCATTTGTACAGCCTTCACACGAGGGGCCTGCCCTCATCCCAG
ACTCTGAGCTGGCTGTTCCAGGAGAGGACCGTTGATCAGGAGTGCAGAACTAGAGGATGT
TGATGTAATTTCTAAGCAAGAACAAACTGTACCTACCACGTGCTTCCAGAACATGGGCCA
GGGCGTGGATCCTGTAGTTGGCTACATTGTAAGCTGCAGCGTGCCGTTGTGGGCCAGTTT
GGTGGTTCACCCACCAGCAGCCAGCACCCCTTCTGTGAGAAGAGTCCCAGAACCAGAGGC
TTTAGACCACAGGGGTCTCTGGTGGGGTCAGAAATGATAGACCCACCCTGCGTGTGCCTG
CCCAGAGCTGGGATCAGTCACCCTGGGAAGCCCAGGCCTCTGTCTCCTTCCTGGGCCCTT
GGAGGCTCTTATCCCACCCAGCCCTGCCTTTTCCCAGGGGAGCAGCCCAAGGGACTTGCC
TGCTTCTGCAGTGGTGAGAAGAGGGCTGGCAGGGCGGGTTGCAGCTTGGCTGCGGAGGCC
CCTTGACCCCTGGGTTCTCCCAACCTGCTCTGGTCCGTGTGAAGGCCTCTGGCACAAGGG
CTGGCACGTCGGAGACATGCAGCCAGCGCTCCCTCTCCTTTAGTTCTCATTAGCGCNAGG
TATTAAGAGCAGGAGCTGATAGACTGCACGTATCTGTGCAGAGATATATCTGTAATTAAA
GNNTTTTATTAAGAAACACCAGACCAGGCAGATGGTTCTTATCCTGGCATCCTGTAAACC
NAACAGCGTGGCTTTCTGATCTTGCAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGGCCCATCCAGGATCATTTGTACAGCCTTCACACGAGGGGCCTGCCCTCATCCCAG
ACTCTGAGCTGGCTGTTCCAGGAGAGGACCGTTGATCAGGAGTGCAGAACTAGAGGATGT
TGATGTAATTTCTAAGCAAGAACAAACTGTACCTACCACGTGCTTCCAGAACATGGGCCA
GGGCGTGGATCCTGTAGTTGGCTACATTGTAAGCTGCAGCGTGCCGTTGTGGGCCAGTTT
GGTGGTTCACCCACCAGCAGCCAGCACCCCTTCTGTGAGAAGAGTCCCAGAACCAGAGGC
TTTAGACCACAGGGGTCTCTGGTGGGGTCAGAAATGATAGACCCACCCTGCGTGTGCCTG
CCCAGAGCTGGGATCAGTCACCCTGGGAAGCCCAGGCCTCTGTCTCCTTCCTGGGCCCTT
GGAGGCTCTTATCCCACCCAGCCCTGCCTTTTCCCAGGGGAGCAGCCCAAGGGACTTGCC
TGCTTCTGCAGTGGTGAGAAGAGGGCTGGCAGGGCGGGTTGCAGCTTGGCTGCGGAGGCC
CCTTGACCCCTGGGTTCTCCCAACCTGCTCTGGTCCGTGTGAAGGCCTCTGGCACAAGGG
CTGGCACGTCGGAGACATGCAGCCAGCGCTCCCTCTCCTTTAGTTCTCATTAGCGCNAGG
TATTAAGAGCAGGAGCTGATAGACTGCACGTATCTGTGCAGAGATATATCTGTAATTAAA
GNNTTTTATTAAGAAACACCAGACCAGGCAGATGGTTCTTATCCTGGCATCCTGTAAACC
NAACAGCGTGGCTTTCTGATCTTGCAAACAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               422-535, - strand, RNAz p=0.591311
               

               
               650-769, + strand, RNAz p=0.860523

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-535, - strand, RNAz p=0.591311
               

               
               650-769, + strand, RNAz p=0.860523

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               349-810, gnl|bosTau2|chr16 (34268790-34268324)
               

               
               349-810, gnl|Hg17|chr1 (6871973-6872475)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               349-810, gnl|bosTau2|chr16 (34268790-34268324)
               

               
               349-810, gnl|Hg17|chr1 (6871973-6872475)

	422-535, - strand, RNAz p=0.591311
	650-769, + strand, RNAz p=0.860523

	349-810, gnl\|bosTau2\|chr16 (34268790-34268324)
	349-810, gnl\|Hg17\|chr1 (6871973-6872475)