Non-Coding RNA Search

Mixg-0009e01

Sequence:


               
               ACATCACAGAGAGGGAGAAGCAGACCTCACTGCTGTGAACAACCTTATCTCTGGAACCCA
CTGACAGAGCACCTCTACTGGGTCCATCAGAACAGATGCCATGGCTGAGTACGACGATGG
AAACACTGGGTTCTTCAATGCTTCCAACGACAGCAGCCAGGGGCACCAGGACTTCCGGCA
GGTCAGCAAGCTCTTCCTGGCCTGGATGGACCTGGTGGTGGTCGTCTGTGGCCTAGTGGG
GAACTCCCTGGGGGTAGTCATCTACATCTTCTACCAGAAACTGAAGAGCCTGACGGATGT
ATTCCTGGTGAACCTGCCCTTGGCAGACCTGGTGCCTGTGTGTACTCTGCCTTTCTGGGC
CTATGCAGGCATCCACGAGTGGGTCTTTGGCAGCATCATGTGCAAAGTCCTGCTGGGCAT
CTACACCCTGAACTTCTACACGTCCATGCTCATCCTCACCTGCATCACCATGGACCGCTT
CATTGCAGTGGTTAAGGCCACCAAGGCCTACGACCAGCAGGCCAAGCGGATGGCCTGGGG
TAGGGCCATCTGCTTGTCCATCTGGATGGTTTGCCTGCTAGTCTCCTTGCCACAGATCAT
CTATGGCAACGTCCTTTACCCAACAGGCTCCTCTGTGGCTATCACAATAACGCAACCCTC
CCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCACAGAGAGGGAGAAGCAGACCTCACTGCTGTGAACAACCTTATCTCTGGAACCCA
CTGACAGAGCACCTCTACTGGGTCCATCAGAACAGATGCCATGGCTGAGTACGACGATGG
AAACACTGGGTTCTTCAATGCTTCCAACGACAGCAGCCAGGGGCACCAGGACTTCCGGCA
GGTCAGCAAGCTCTTCCTGGCCTGGATGGACCTGGTGGTGGTCGTCTGTGGCCTAGTGGG
GAACTCCCTGGGGGTAGTCATCTACATCTTCTACCAGAAACTGAAGAGCCTGACGGATGT
ATTCCTGGTGAACCTGCCCTTGGCAGACCTGGTGCCTGTGTGTACTCTGCCTTTCTGGGC
CTATGCAGGCATCCACGAGTGGGTCTTTGGCAGCATCATGTGCAAAGTCCTGCTGGGCAT
CTACACCCTGAACTTCTACACGTCCATGCTCATCCTCACCTGCATCACCATGGACCGCTT
CATTGCAGTGGTTAAGGCCACCAAGGCCTACGACCAGCAGGCCAAGCGGATGGCCTGGGG
TAGGGCCATCTGCTTGTCCATCTGGATGGTTTGCCTGCTAGTCTCCTTGCCACAGATCAT
CTATGGCAACGTCCTTTACCCAACAGGCTCCTCTGTGGCTATCACAATAACGCAACCCTC
CCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675917|ref|NP_001001623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675917|ref|NP_001001623.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-645, - strand, RNAz p=0.999933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-645, - strand, RNAz p=0.999933

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               80-645, gnl|bosTau2|chr22 (42080476-42079910)
               

               
               80-645, gnl|Hg17|chr3 (45962957-45963529)
               

               
               80-645, gnl|Mm7|chr9 (123528716-123529312)
               


               
               230-603, gnl|bosTau2|chr19 (34059317-34059690)
               

               
               230-603, gnl|Hg17|chr17 (35965443-35965070)
               

               
               230-603, gnl|Mm7|chr11 (99254920-99254547)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-645, gnl|bosTau2|chr22 (42080476-42079910)
               

               
               80-645, gnl|Hg17|chr3 (45962957-45963529)
               

               
               80-645, gnl|Mm7|chr9 (123528716-123529312)
               


               
               230-603, gnl|bosTau2|chr19 (34059317-34059690)
               

               
               230-603, gnl|Hg17|chr17 (35965443-35965070)
               

               
               230-603, gnl|Mm7|chr11 (99254920-99254547)

	80-645, gnl\|bosTau2\|chr22 (42080476-42079910)
	80-645, gnl\|Hg17\|chr3 (45962957-45963529)
	80-645, gnl\|Mm7\|chr9 (123528716-123529312)

	230-603, gnl\|bosTau2\|chr19 (34059317-34059690)
	230-603, gnl\|Hg17\|chr17 (35965443-35965070)
	230-603, gnl\|Mm7\|chr11 (99254920-99254547)