Mixn-0001b01
|
GGGAGGAGCTGGAGGTGCCAATCTAAGAGGAAGAGGAGGGGCTGAGAGACCAGGGGTCTT
TGGGTGTGAAAGGGCTGAAGGAGGAGGCAGGTGGGAGGCCAGAGTTGGGGTCCAGCAGGT
GTGGGCTCAAGTCCTCACCCAGTCTCCATCACCTCTGCCCTAGTTCCAGCCACTCTCATC
TGGTGGCTTTGCTACCTTACAGCAGGTCCCCCTGCAATCTATTCTGTCCCCAGAGGCCGG
AGGGACCTTTCCATACTGAAATCAGATTGTGCCAGTCCCTGGCTTGCAATCTGTCCTGGC
AATGCTGATAATGCTTTGCCCTGGCCTTTCAGCTGAAATCCACCTTCACCAACCCTTCCT
GCACCCCCAGATCTCTTCACTGACCCAGGCTTCTGTCCCCTGGCTATGTCCTTAGTGACC
CCTGTGCACCCTGCCCCATCTGCTGACTCATATTCCCCTGCCCGGACCCTGACTCCTGCC
CTCTAAGGATGCTGGCTCCACTTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGGAGCTGGAGGTGCCAATCTAAGAGGAAGAGGAGGGGCTGAGAGACCAGGGGTCTT
TGGGTGTGAAAGGGCTGAAGGAGGAGGCAGGTGGGAGGCCAGAGTTGGGGTCCAGCAGGT
GTGGGCTCAAGTCCTCACCCAGTCTCCATCACCTCTGCCCTAGTTCCAGCCACTCTCATC
TGGTGGCTTTGCTACCTTACAGCAGGTCCCCCTGCAATCTATTCTGTCCCCAGAGGCCGG
AGGGACCTTTCCATACTGAAATCAGATTGTGCCAGTCCCTGGCTTGCAATCTGTCCTGGC
AATGCTGATAATGCTTTGCCCTGGCCTTTCAGCTGAAATCCACCTTCACCAACCCTTCCT
GCACCCCCAGATCTCTTCACTGACCCAGGCTTCTGTCCCCTGGCTATGTCCTTAGTGACC
CCTGTGCACCCTGCCCCATCTGCTGACTCATATTCCCCTGCCCGGACCCTGACTCCTGCC
CTCTAAGGATGCTGGCTCCACTTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
79-187, + strand, RNAmicro p=0.938298 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
79-187, + strand, RNAmicro p=0.938298 |
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51-320, gnl|bosTau2|chr7 (26259408-26259670) |
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51-320, gnl|canFam2|chr4 (39903694-39903347) |
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51-320, gnl|dasNov1|scaffold_201961 (624-311) |
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51-320, gnl|echTel1|scaffold_303215 (8166-8504) |
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51-320, gnl|hg17|chr5 (175987873-175988207) |
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51-320, gnl|Hg17|chr5 (175987872-175988128) |
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51-320, gnl|mm7|chr13 (53846567-53846892) |
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51-320, gnl|Mm7|chr13 (53846565-53846823) |
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51-320, gnl|oryCun1|scaffold_163308 (10818-11086) |
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51-320, gnl|rheMac2|chr6 (173115156-173115500) |
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51-320, gnl|rn3|chr17 (15909894-15909564) |
| |
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321-498, gnl|bosTau2|chr7 (26260602-26260778) |
|
321-498, gnl|Hg17|chr5 (175988907-175989084) |
|
321-498, gnl|Mm7|chr13 (53847697-53847856) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
51-320, gnl|bosTau2|chr7 (26259408-26259670) |
|
51-320, gnl|canFam2|chr4 (39903694-39903347) |
|
51-320, gnl|dasNov1|scaffold_201961 (624-311) |
|
51-320, gnl|echTel1|scaffold_303215 (8166-8504) |
|
51-320, gnl|hg17|chr5 (175987873-175988207) |
|
51-320, gnl|Hg17|chr5 (175987872-175988128) |
|
51-320, gnl|mm7|chr13 (53846567-53846892) |
|
51-320, gnl|Mm7|chr13 (53846565-53846823) |
|
51-320, gnl|oryCun1|scaffold_163308 (10818-11086) |
|
51-320, gnl|rheMac2|chr6 (173115156-173115500) |
|
51-320, gnl|rn3|chr17 (15909894-15909564) |
| |
|
321-498, gnl|bosTau2|chr7 (26260602-26260778) |
|
321-498, gnl|Hg17|chr5 (175988907-175989084) |
|
321-498, gnl|Mm7|chr13 (53847697-53847856) |
