Non-Coding RNA Search

Mixn-0002j20

Sequence:


               
               GAGTCTGTGTCCTGGAAAAGCACCTCATAGCGCCCGTCGGCTGCATCCACCTGGTCCACG
GCGACAGTGGTGAGACGGTAGGGCGCGCCTGTGCGGACCACTAGGGGCCGCCGCTGCAGA
GGGTACACGGCCTGGTACATGAGTGGGTGGCTGCGCATGAAGTTGATCACCTCATCAGGA
TAGTCCTTGGTGGACTTCATGGATGGCGTGAAGGTTCCGCCAGGGCACGTGCCGGGCCGT
GGGTAGGGCATCTTCCCTGAGAAGGGCATCCACTGGTAGTTGGGGCCCTCCTTGTGGGCA
AAGGGCCCATTGAAGACCATGCGAATGTCAGCCATGGAGTAGACACATACGGCAGAGCCT
CGGAACACAGAGCCCGAGGAGGTAAAGACAGCATAAATGACTGGGTTCCTCACATCCTGG
GTCTGCTGGACAAACACATCCTGGAGCTCATCAAAGTGTGTCTCGATGCCATCTTCGCCT
GGTACTGAACAAACCAGCCGTGCCTTCAGGAATGTGCTCCACTTGTTGACCAGGCAGCAG
TGGCCGCCGTCATCATTCAGGCAGATCCGCCCAATGCGGGCGTACACGGCGGGGCTCTGC
GGTGCCTCAGCAGACCGCTCGCGGAAGAAGAAGTAGAGCTTGTCGTCGTTACGCTCTGCG
CTGTCAGGGATGAGCTCGGCATTGATGAATGAAGGGTCATTGAGCCACCGGGAGTTGTAC
TGATCTGTGCGCATGGCTGTCTNGCTTTCNAGGGTGCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCTGTGTCCTGGAAAAGCACCTCATAGCGCCCGTCGGCTGCATCCACCTGGTCCACG
GCGACAGTGGTGAGACGGTAGGGCGCGCCTGTGCGGACCACTAGGGGCCGCCGCTGCAGA
GGGTACACGGCCTGGTACATGAGTGGGTGGCTGCGCATGAAGTTGATCACCTCATCAGGA
TAGTCCTTGGTGGACTTCATGGATGGCGTGAAGGTTCCGCCAGGGCACGTGCCGGGCCGT
GGGTAGGGCATCTTCCCTGAGAAGGGCATCCACTGGTAGTTGGGGCCCTCCTTGTGGGCA
AAGGGCCCATTGAAGACCATGCGAATGTCAGCCATGGAGTAGACACATACGGCAGAGCCT
CGGAACACAGAGCCCGAGGAGGTAAAGACAGCATAAATGACTGGGTTCCTCACATCCTGG
GTCTGCTGGACAAACACATCCTGGAGCTCATCAAAGTGTGTCTCGATGCCATCTTCGCCT
GGTACTGAACAAACCAGCCGTGCCTTCAGGAATGTGCTCCACTTGTTGACCAGGCAGCAG
TGGCCGCCGTCATCATTCAGGCAGATCCGCCCAATGCGGGCGTACACGGCGGGGCTCTGC
GGTGCCTCAGCAGACCGCTCGCGGAAGAAGAAGTAGAGCTTGTCGTCGTTACGCTCTGCG
CTGTCAGGGATGAGCTCGGCATTGATGAATGAAGGGTCATTGAGCCACCGGGAGTTGTAC
TGATCTGTGCGCATGGCTGTCTNGCTTTCNAGGGTGCGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5XNV6_PETMA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5XNV6_PETMA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-235, + strand, RNAz p=0.635104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-235, + strand, RNAz p=0.635104

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-235, gnl|bosTau2|chr22 (38433998-38433769)
               

               
               5-235, gnl|Hg17|chr3 (50197251-50197022)
               

               
               5-235, gnl|Mm7|chr9 (107414772-107415001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-235, gnl|bosTau2|chr22 (38433998-38433769)
               

               
               5-235, gnl|Hg17|chr3 (50197251-50197022)
               

               
               5-235, gnl|Mm7|chr9 (107414772-107415001)

	5-235, gnl\|bosTau2\|chr22 (38433998-38433769)
	5-235, gnl\|Hg17\|chr3 (50197251-50197022)
	5-235, gnl\|Mm7\|chr9 (107414772-107415001)