Non-Coding RNA Search

Mixn-0006d14

Sequence:


               
               CCAGACCCTGGAGCAGGAGCCCCAAGGGCTGAGGTCACAAGGCATGGCCATGACCCAGTC
GGGCAGCAAGGCCCTCCAGCGGGCCCATCGTTGTGCCCACTGCCGAAGGCACTTCCCGGG
CTGGGTGGCCCTCTGGCTTCATGCCCGGCACTGCCAGGCCCGGCTGCCCCTACCCTGTCC
CGAATGTGGCCGGCGCTTCCGCCACGCCCCCTTCTTGGCGCTGCACTGCCAGGTCCATGC
CGCCGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTGCGGGCAGAGCTTCCGAGGCTG
GGTGGCCCTGATTCTGCACCTGCGGGCCCACTCGGTTGCGAAGCGGCCCATCGCCTGTCC
CGACTGCGAGAGACGCTTCTGGCGAAGAAAGCAGCTGCGGGCCCATCGGCGGCGCTGCCA
CCCGCCGGCCCCCGAGGCCCGGCCCTTCATCTGCGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGACCCTGGAGCAGGAGCCCCAAGGGCTGAGGTCACAAGGCATGGCCATGACCCAGTC
GGGCAGCAAGGCCCTCCAGCGGGCCCATCGTTGTGCCCACTGCCGAAGGCACTTCCCGGG
CTGGGTGGCCCTCTGGCTTCATGCCCGGCACTGCCAGGCCCGGCTGCCCCTACCCTGTCC
CGAATGTGGCCGGCGCTTCCGCCACGCCCCCTTCTTGGCGCTGCACTGCCAGGTCCATGC
CGCCGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTGCGGGCAGAGCTTCCGAGGCTG
GGTGGCCCTGATTCTGCACCTGCGGGCCCACTCGGTTGCGAAGCGGCCCATCGCCTGTCC
CGACTGCGAGAGACGCTTCTGGCGAAGAAAGCAGCTGCGGGCCCATCGGCGGCGCTGCCA
CCCGCCGGCCCCCGAGGCCCGGCCCTTCATCTGCGGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-359, - strand, RNAz p=0.905613

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-359, - strand, RNAz p=0.905613

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               222-349, + strand, RNAmicro p=0.999912

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               222-349, + strand, RNAmicro p=0.999912

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-459, gnl|bosTau2|chr4 (65120527-65120985)
               

               
               1-459, gnl|Hg17|chr7 (149506062-149506520)
               

               
               1-459, gnl|Mm7|chr6 (48556440-48556883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr4 (65120527-65120985)
               

               
               1-459, gnl|Hg17|chr7 (149506062-149506520)
               

               
               1-459, gnl|Mm7|chr6 (48556440-48556883)

	1-459, gnl\|bosTau2\|chr4 (65120527-65120985)
	1-459, gnl\|Hg17\|chr7 (149506062-149506520)
	1-459, gnl\|Mm7\|chr6 (48556440-48556883)