Non-Coding RNA Search

Mixn-0006e07

Sequence:


               
               GGGGCCGACACAGCGTTCGCTCCACCTTTTGGTAGAGGTACTTGCGCTGCAACATCCCTC
GCAGGATCAGGGGCACCTGGAAAGACACTACCGCCTCCTTCTGGCGAACCACAAACAGCA
AAGGAGCCCCCTTCTGCTTGTTCAGGACATTCACGGATACACGCACGCCTTCTGTCCGGT
TGCGGGTCACTGTATGGTTGAAGGTGTAGATGTTGACCAGCTCGCTGTTGACCTCATCCA
CGTAGGTGCGCTCAAACTCGGCGTCTTTCTGCGAGACGTTCTTAGGCCCCAGAACCCCCA
GATGGCTCTCGACCGAGGCCACCAAGAGTGCCAAGAAGGCCAAGCCCGGAGCGAACATGG
CCCCGGCAGGGCGGCAGTGGCGGCGGCGGCGACAGGCGACAGGACACCTCCAGGGCAGGT
TGCGGCTCTGGCCGCAGCTTCCAGCATCTCACCAGGACCAGAACTTTAACCCCGGCCTGA
GATTAGGAATCGTCCCCTCCCAGGAGCCATAGACACACTCTCAGTAGCCCGAGAGGGGAG
GGGGCGGCTAGAAGGGCGAGGGGAGAGCTTGGGGTACGGGCCACAGGAAGGGGTCCCAGC
TCGCCAGGGACAGAGCACTGTCCGGAGACCCGGCGGACGCCCGCCAGGGCCCTGAGAGCG
NAGAGGCGGCTGGTTGCTGGGAGCCTGGAGACGCCGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCGACACAGCGTTCGCTCCACCTTTTGGTAGAGGTACTTGCGCTGCAACATCCCTC
GCAGGATCAGGGGCACCTGGAAAGACACTACCGCCTCCTTCTGGCGAACCACAAACAGCA
AAGGAGCCCCCTTCTGCTTGTTCAGGACATTCACGGATACACGCACGCCTTCTGTCCGGT
TGCGGGTCACTGTATGGTTGAAGGTGTAGATGTTGACCAGCTCGCTGTTGACCTCATCCA
CGTAGGTGCGCTCAAACTCGGCGTCTTTCTGCGAGACGTTCTTAGGCCCCAGAACCCCCA
GATGGCTCTCGACCGAGGCCACCAAGAGTGCCAAGAAGGCCAAGCCCGGAGCGAACATGG
CCCCGGCAGGGCGGCAGTGGCGGCGGCGGCGACAGGCGACAGGACACCTCCAGGGCAGGT
TGCGGCTCTGGCCGCAGCTTCCAGCATCTCACCAGGACCAGAACTTTAACCCCGGCCTGA
GATTAGGAATCGTCCCCTCCCAGGAGCCATAGACACACTCTCAGTAGCCCGAGAGGGGAG
GGGGCGGCTAGAAGGGCGAGGGGAGAGCTTGGGGTACGGGCCACAGGAAGGGGTCCCAGC
TCGCCAGGGACAGAGCACTGTCCGGAGACCCGGCGGACGCCCGCCAGGGCCCTGAGAGCG
NAGAGGCGGCTGGTTGCTGGGAGCCTGGAGACGCCGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840991|ref|XP_583574.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840991|ref|XP_583574.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-598, - strand, RNAz p=0.999946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-598, - strand, RNAz p=0.999946

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY358442, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358442, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               176-696, gnl|bosTau2|chr15 (9185852-9185325)
               

               
               176-696, gnl|Hg17|chr11 (116555372-116554842)
               

               
               176-696, gnl|Mm7|chr9 (45912847-45913283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-696, gnl|bosTau2|chr15 (9185852-9185325)
               

               
               176-696, gnl|Hg17|chr11 (116555372-116554842)
               

               
               176-696, gnl|Mm7|chr9 (45912847-45913283)

	176-696, gnl\|bosTau2\|chr15 (9185852-9185325)
	176-696, gnl\|Hg17\|chr11 (116555372-116554842)
	176-696, gnl\|Mm7\|chr9 (45912847-45913283)