Non-Coding RNA Search

Mixn-0007a15

Sequence:


               
               CAGAGAACCATAATCAGAGAGCTATGCTATGACAATTAGCTGCAGGCTCTAGCCCTTTGT
AAACCCTTAATCAAGGCATGCAAGATATCTAGAGCCACATGCTGGAATGCATCTGGGTGC
ATTTCATCGAAGGCCGACATAATTCCATGGTCCTGGGGGTGTTAAAAGTTTCTGCAACTT
TCCATCATAGAGACTTGGGTCAGTATCTTCTCCCCAAAGTGTCACTCAGAGTGAGGCTAA
TATGCAACAAGGAGAGAACTGGGTCCATCTCACTCTCCTGTACTCGGCATTGAGCAAATA
TATTACAGGCAACAAACTGCAATAGAAATTAAACTTTGATTATAAACTATAAGAGCAGGA
TTTTGCAGCAGACATCGACTGCAATTCACTGAGATTGTAAGAAAAAGGCTCTACACGCTC
ACCAGGACTGCAGCATTTACAGAAGAAAAACAGAGCAGCTGCCAAGTGTTCCTTGGATGG
ACAGCTCATACTACCATGGAAACCACAGAGAACAGGCATGAGGACTAAAGGGCAAAGCTC
CAAAAGAGTCCAGGTTGCAAAAGCAAGGGCTTGTGTCAAAGCTGAAAGTGACCTCAAGAG
ATCATACAGTTTAAACCCCTCGATTTACCACAGGAGAAATTTGGGTCCAGGGAACATGGG
AGAAATTTGGGTCCAGGGAACAAATGTGACCCCCACTGTCACACAGAGGAGTGATACCTC
TTCTCTGATCACAGTAAGGGCCAAATGATATAATTACATATAGCCCCAGAGGCTGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAACCATAATCAGAGAGCTATGCTATGACAATTAGCTGCAGGCTCTAGCCCTTTGT
AAACCCTTAATCAAGGCATGCAAGATATCTAGAGCCACATGCTGGAATGCATCTGGGTGC
ATTTCATCGAAGGCCGACATAATTCCATGGTCCTGGGGGTGTTAAAAGTTTCTGCAACTT
TCCATCATAGAGACTTGGGTCAGTATCTTCTCCCCAAAGTGTCACTCAGAGTGAGGCTAA
TATGCAACAAGGAGAGAACTGGGTCCATCTCACTCTCCTGTACTCGGCATTGAGCAAATA
TATTACAGGCAACAAACTGCAATAGAAATTAAACTTTGATTATAAACTATAAGAGCAGGA
TTTTGCAGCAGACATCGACTGCAATTCACTGAGATTGTAAGAAAAAGGCTCTACACGCTC
ACCAGGACTGCAGCATTTACAGAAGAAAAACAGAGCAGCTGCCAAGTGTTCCTTGGATGG
ACAGCTCATACTACCATGGAAACCACAGAGAACAGGCATGAGGACTAAAGGGCAAAGCTC
CAAAAGAGTCCAGGTTGCAAAAGCAAGGGCTTGTGTCAAAGCTGAAAGTGACCTCAAGAG
ATCATACAGTTTAAACCCCTCGATTTACCACAGGAGAAATTTGGGTCCAGGGAACATGGG
AGAAATTTGGGTCCAGGGAACAAATGTGACCCCCACTGTCACACAGAGGAGTGATACCTC
TTCTCTGATCACAGTAAGGGCCAAATGATATAATTACATATAGCCCCAGAGGCTGATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               39-150, - strand, RNAz p=0.938316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-150, - strand, RNAz p=0.938316

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-286, gnl|bosTau2|chr9 (44970589-44970869)
               

               
               1-286, gnl|Hg17|chr6 (138935968-138936204)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr9 (44970589-44970869)
               

               
               1-286, gnl|Hg17|chr6 (138935968-138936204)

	1-286, gnl\|bosTau2\|chr9 (44970589-44970869)
	1-286, gnl\|Hg17\|chr6 (138935968-138936204)