Non-Coding RNA Search

Mixn-0007a20

Sequence:


               
               CCTCCCTTTCTTTTAGAGAGAGGAAGCAGGGCAAGGTTAACATAATCATAACTCTGAATA
GATGAACTTATAGGAAACTATGACCATAAACACAATGGGCCAAACTGTTCTCAGGAGAAG
CCACAATCCTGCCTCAGCTCCTTTGTTCGTGCCATTTCCTTCCTTTCAGAGTTCCCTGGA
CATTCCTCTGTGTCTGGTTCTTGGGCTCCTAACCCCCACACCATCCTTAAACACTGGTGT
TCCTTAAGGATCTGGACCCTATTAGTCTACTGTCGATTCTCTCCCATTCCATGTCCTCAT
GGGGAAGCGTCAGGTAGTCATCCATGGTTTTACCGATTTTACTACTCTGCTCACCATTCC
TTTCCTTTCTCTCTCCTGAAGGCCCAGTACCCACTGGACTGTCTCAACGGCCCCTGTTTT
ATCAATTCAAAACTGAACATGATTCAGCTTCTCTCCCTCAAACCTCAGTCATGCCCTCTT
TCCCCATCACAGCCCAGCCACACATTCCCCATCCTTCAAACTCCAGGCCTCAGTTACTGG
GCCCACTACACACTCAAGGGCCACTTCCACCCTTTTATCTTATTCTATTTCATTTTTATA
CCAAGAGCAGTAGGGGCTGGACAAGCCCCAAATGAACTTCACTCACCCTGGGAGTTTGGT
GGATCAGAAGGGCTCCTGGCCATCAGGCACTCATCTACACCAGCTGATCTGTGGAGCGAG
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCTTTCTTTTAGAGAGAGGAAGCAGGGCAAGGTTAACATAATCATAACTCTGAATA
GATGAACTTATAGGAAACTATGACCATAAACACAATGGGCCAAACTGTTCTCAGGAGAAG
CCACAATCCTGCCTCAGCTCCTTTGTTCGTGCCATTTCCTTCCTTTCAGAGTTCCCTGGA
CATTCCTCTGTGTCTGGTTCTTGGGCTCCTAACCCCCACACCATCCTTAAACACTGGTGT
TCCTTAAGGATCTGGACCCTATTAGTCTACTGTCGATTCTCTCCCATTCCATGTCCTCAT
GGGGAAGCGTCAGGTAGTCATCCATGGTTTTACCGATTTTACTACTCTGCTCACCATTCC
TTTCCTTTCTCTCTCCTGAAGGCCCAGTACCCACTGGACTGTCTCAACGGCCCCTGTTTT
ATCAATTCAAAACTGAACATGATTCAGCTTCTCTCCCTCAAACCTCAGTCATGCCCTCTT
TCCCCATCACAGCCCAGCCACACATTCCCCATCCTTCAAACTCCAGGCCTCAGTTACTGG
GCCCACTACACACTCAAGGGCCACTTCCACCCTTTTATCTTATTCTATTTCATTTTTATA
CCAAGAGCAGTAGGGGCTGGACAAGCCCCAAATGAACTTCACTCACCCTGGGAGTTTGGT
GGATCAGAAGGGCTCCTGGCCATCAGGCACTCATCTACACCAGCTGATCTGTGGAGCGAG
G

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-109, - strand, RNAz p=0.913546
               

               
               600-711, + strand, RNAz p=0.970759

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-109, - strand, RNAz p=0.913546
               

               
               600-711, + strand, RNAz p=0.970759

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF318333, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF318333, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-505, gnl|bosTau2|chr1 (64742343-64741832)
               

               
               2-505, gnl|canFam2|chr34 (39107715-39108363)
               

               
               2-505, gnl|echTel1|scaffold_180303 (5-631)
               

               
               2-505, gnl|hg17|chr3 (172991952-172992627)
               

               
               2-505, gnl|Hg17|chr3 (172992259-172992784)
               

               
               2-505, gnl|loxAfr1|scaffold_53658 (12090-11466)
               

               
               2-505, gnl|mm7|chr3 (27780196-27779559)
               

               
               2-505, gnl|oryCun1|scaffold_206291 (46520-45908)
               

               
               2-505, gnl|panTro1|chr2 (176488569-176489237)
               

               
               2-505, gnl|rheMac2|chr2 (115253951-115253276)
               

               
               2-505, gnl|rn3|chr2 (115227972-115227340)
               


               
               575-711, gnl|bosTau2|chr1 (64740400-64740264)
               

               
               575-711, gnl|Hg17|chr3 (172992842-172992982)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-505, gnl|bosTau2|chr1 (64742343-64741832)
               

               
               2-505, gnl|canFam2|chr34 (39107715-39108363)
               

               
               2-505, gnl|echTel1|scaffold_180303 (5-631)
               

               
               2-505, gnl|hg17|chr3 (172991952-172992627)
               

               
               2-505, gnl|Hg17|chr3 (172992259-172992784)
               

               
               2-505, gnl|loxAfr1|scaffold_53658 (12090-11466)
               

               
               2-505, gnl|mm7|chr3 (27780196-27779559)
               

               
               2-505, gnl|oryCun1|scaffold_206291 (46520-45908)
               

               
               2-505, gnl|panTro1|chr2 (176488569-176489237)
               

               
               2-505, gnl|rheMac2|chr2 (115253951-115253276)
               

               
               2-505, gnl|rn3|chr2 (115227972-115227340)
               


               
               575-711, gnl|bosTau2|chr1 (64740400-64740264)
               

               
               575-711, gnl|Hg17|chr3 (172992842-172992982)

	2-109, - strand, RNAz p=0.913546
	600-711, + strand, RNAz p=0.970759

	2-505, gnl\|bosTau2\|chr1 (64742343-64741832)
	2-505, gnl\|canFam2\|chr34 (39107715-39108363)
	2-505, gnl\|echTel1\|scaffold_180303 (5-631)
	2-505, gnl\|hg17\|chr3 (172991952-172992627)
	2-505, gnl\|Hg17\|chr3 (172992259-172992784)
	2-505, gnl\|loxAfr1\|scaffold_53658 (12090-11466)
	2-505, gnl\|mm7\|chr3 (27780196-27779559)
	2-505, gnl\|oryCun1\|scaffold_206291 (46520-45908)
	2-505, gnl\|panTro1\|chr2 (176488569-176489237)
	2-505, gnl\|rheMac2\|chr2 (115253951-115253276)
	2-505, gnl\|rn3\|chr2 (115227972-115227340)

	575-711, gnl\|bosTau2\|chr1 (64740400-64740264)
	575-711, gnl\|Hg17\|chr3 (172992842-172992982)