Non-Coding RNA Search

Mixn-0007d15

Sequence:


               
               GAGCCCCTCAACGTCACTTTGGGGATTTCGTCCACAGATTCAGCTTTTCCAAAAAGCTTG
AGCCTTGCGTTATATTCAGATAGACGATCTTCTTGGGCATGGCTAGCATAATTGCACGTG
TGGGTAACAGCCGGCAGCAGAGTACACCCTTGCCACCTTGGGCCCATTCCATCTTGAGGT
CCTTGGGGAGGAGTCTTGGTCCTTTAAGGGTCAATATGGTGGAAAGAAACATGAAGTTGT
TCTCCGGAAGGGCGGTGCCAGCCCAAGGGGAAGAAACCTTTGAAAACTGGCTGATCCAAG
TCAATGGGATCCTGCCAGATTGGAATATGTCTGAGGAGGAAAAGCTCAAGCGCTTGATGA
AAACCCTGAGGGGCCCCGCGAGGGAGGTCATGCGTTTGCTGCAGGCGGCCAACCCTAACC
TAAGTGTGGCAGATTTCTTGCGTGCCATGAAATTGGTGTTTGGGGATTCTGAATGCAGTG
TCACTGCCCATGGTAAATTCTTTAACACTTTGCAGGCACAAGGGGAGAAAGCCTCCCTTT
ATGTGATCCGTTTAGAAGTGCAGCTCCAGAATGCTATTCAGGCAGGGATCATAGCTGAGA
AACACACAAACCAGACTCGCCTGCACCAGTTCCTTTTAGGGGCTGAACTGCATGGGGACC
TGCACTTCAGGCTGAAGCTTCTTCTCAGGATGTATGCACATGATCCGGAGCGTCTTCCCA
ACTTCCTGGAGTTAGTCAAGATGATAAGGGAGACAGAAGACTGGGATGACACTTTTATGA
AACGGAAGCGTTTCAAAAGATCTGAGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCCCTCAACGTCACTTTGGGGATTTCGTCCACAGATTCAGCTTTTCCAAAAAGCTTG
AGCCTTGCGTTATATTCAGATAGACGATCTTCTTGGGCATGGCTAGCATAATTGCACGTG
TGGGTAACAGCCGGCAGCAGAGTACACCCTTGCCACCTTGGGCCCATTCCATCTTGAGGT
CCTTGGGGAGGAGTCTTGGTCCTTTAAGGGTCAATATGGTGGAAAGAAACATGAAGTTGT
TCTCCGGAAGGGCGGTGCCAGCCCAAGGGGAAGAAACCTTTGAAAACTGGCTGATCCAAG
TCAATGGGATCCTGCCAGATTGGAATATGTCTGAGGAGGAAAAGCTCAAGCGCTTGATGA
AAACCCTGAGGGGCCCCGCGAGGGAGGTCATGCGTTTGCTGCAGGCGGCCAACCCTAACC
TAAGTGTGGCAGATTTCTTGCGTGCCATGAAATTGGTGTTTGGGGATTCTGAATGCAGTG
TCACTGCCCATGGTAAATTCTTTAACACTTTGCAGGCACAAGGGGAGAAAGCCTCCCTTT
ATGTGATCCGTTTAGAAGTGCAGCTCCAGAATGCTATTCAGGCAGGGATCATAGCTGAGA
AACACACAAACCAGACTCGCCTGCACCAGTTCCTTTTAGGGGCTGAACTGCATGGGGACC
TGCACTTCAGGCTGAAGCTTCTTCTCAGGATGTATGCACATGATCCGGAGCGTCTTCCCA
ACTTCCTGGAGTTAGTCAAGATGATAAGGGAGACAGAAGACTGGGATGACACTTTTATGA
AACGGAAGCGTTTCAAAAGATCTGAGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21411484|gb|AAH31241.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21411484|gb|AAH31241.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               179-378, + strand, RNAz p=0.940394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-378, + strand, RNAz p=0.940394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-806, gnl|bosTau2|chrX (925443-924670)
               

               
               35-806, gnl|Hg17|chrX (117741025-117741797)
               

               
               35-806, gnl|Mm7|chrX (30957118-30957902)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-806, gnl|bosTau2|chrX (925443-924670)
               

               
               35-806, gnl|Hg17|chrX (117741025-117741797)
               

               
               35-806, gnl|Mm7|chrX (30957118-30957902)

	35-806, gnl\|bosTau2\|chrX (925443-924670)
	35-806, gnl\|Hg17\|chrX (117741025-117741797)
	35-806, gnl\|Mm7\|chrX (30957118-30957902)