Non-Coding RNA Search

Mixn-0008b20

Sequence:


               
               GGGACTGAGAACCTTCCTTCCGCCTATCATCTCGAATAAGGGGTTTCTTTTGAACATAAG
AGCGCTACTTTTCCTGTAGCAAGTACGGATGCGGACGGGTTAAATTTCCTCTTGTCAGTC
AGATTTAGGGCAGGGAAGTGTTCTCCTCCCCTCGAAGTTCTAGGGACCTCAGTTTTTGGT
TTTGATTGATTTATTTTTGTGTCCTAATTCTCTAAAGTTTCCTTCCCAAATCAGAAAGTA
TCCTTGGCTACAGAGTCTGCTCTTTAGACTTGGTCTGTTCAGTGGATGGAAACTATTTTA
TTCGGAAGCCTTTATAGAGAAGCGATGGTTTATCTCATGAAATATCTGAGTTTGTCATAA
ACTGTTTCCTTTCTGTGCAGGAATTTATTTTCTGTGAAATTCCAGGTGTTCTTTTGCATA
GACTTGAAAGGAATGGGGTTGAGAGTTCAGGGTTTTTTTGTGTTGGGTTTTTTTTTATTT
TTGCTGAGAAGAATATTTTCTTGTGATGGATTAATTGAGGATGAAATCAGATAACGTAGG
TGAAATCCCTAGGTATGCAGAGTGAAAACCATTACTTTAATGGATTTTAGTTGCCCTGTG
CTGCACAGCCAGTTTTGAATGCTGTGATGTTGGAGCTGGTAAAGCATTCTGCTCCTGTGC
TTTCTTATGCCGGTGGGAACTCTTTTCTTTGACACTCCTGCTAGCCTGGAACTTCTGGAG
ACAGGGACAAAACTCATTCATCATCGTAGTCTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACTGAGAACCTTCCTTCCGCCTATCATCTCGAATAAGGGGTTTCTTTTGAACATAAG
AGCGCTACTTTTCCTGTAGCAAGTACGGATGCGGACGGGTTAAATTTCCTCTTGTCAGTC
AGATTTAGGGCAGGGAAGTGTTCTCCTCCCCTCGAAGTTCTAGGGACCTCAGTTTTTGGT
TTTGATTGATTTATTTTTGTGTCCTAATTCTCTAAAGTTTCCTTCCCAAATCAGAAAGTA
TCCTTGGCTACAGAGTCTGCTCTTTAGACTTGGTCTGTTCAGTGGATGGAAACTATTTTA
TTCGGAAGCCTTTATAGAGAAGCGATGGTTTATCTCATGAAATATCTGAGTTTGTCATAA
ACTGTTTCCTTTCTGTGCAGGAATTTATTTTCTGTGAAATTCCAGGTGTTCTTTTGCATA
GACTTGAAAGGAATGGGGTTGAGAGTTCAGGGTTTTTTTGTGTTGGGTTTTTTTTTATTT
TTGCTGAGAAGAATATTTTCTTGTGATGGATTAATTGAGGATGAAATCAGATAACGTAGG
TGAAATCCCTAGGTATGCAGAGTGAAAACCATTACTTTAATGGATTTTAGTTGCCCTGTG
CTGCACAGCCAGTTTTGAATGCTGTGATGTTGGAGCTGGTAAAGCATTCTGCTCCTGTGC
TTTCTTATGCCGGTGGGAACTCTTTTCTTTGACACTCCTGCTAGCCTGGAACTTCTGGAG
ACAGGGACAAAACTCATTCATCATCGTAGTCTTAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               194-296, - strand, RNAz p=0.509727
               

               
               363-456, + strand, RNAz p=0.993732

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-296, - strand, RNAz p=0.509727
               

               
               363-456, + strand, RNAz p=0.993732

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-456, gnl|bosTau2|chr3 (55429214-55429675)
               

               
               3-456, gnl|Hg17|chr1 (64044128-64044600)
               

               
               3-456, gnl|Mm7|chr4 (99546821-99547252)
               


               
               478-755, gnl|bosTau2|chr3 (55429672-55429946)
               

               
               478-755, gnl|Hg17|chr1 (64044597-64044884)
               

               
               478-755, gnl|Mm7|chr4 (99547249-99547521)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-456, gnl|bosTau2|chr3 (55429214-55429675)
               

               
               3-456, gnl|Hg17|chr1 (64044128-64044600)
               

               
               3-456, gnl|Mm7|chr4 (99546821-99547252)
               


               
               478-755, gnl|bosTau2|chr3 (55429672-55429946)
               

               
               478-755, gnl|Hg17|chr1 (64044597-64044884)
               

               
               478-755, gnl|Mm7|chr4 (99547249-99547521)

	194-296, - strand, RNAz p=0.509727
	363-456, + strand, RNAz p=0.993732

	3-456, gnl\|bosTau2\|chr3 (55429214-55429675)
	3-456, gnl\|Hg17\|chr1 (64044128-64044600)
	3-456, gnl\|Mm7\|chr4 (99546821-99547252)

	478-755, gnl\|bosTau2\|chr3 (55429672-55429946)
	478-755, gnl\|Hg17\|chr1 (64044597-64044884)
	478-755, gnl\|Mm7\|chr4 (99547249-99547521)