Non-Coding RNA Search

Mixn-0008m02

Sequence:


               
               GGGAGCTGGGTGGGGTGGTGAGCTGGGCTGCGATCTGCCGGCTCCTCGCCTTGGCCTCTT
TGAGGTCCTTCTCGGTCAGGCTAGGGCTCCGGCCCAATTCTGGTTTCCAGGCAGCCCTGG
GCCCAGGGCTGGGGCTGAGGCTGGCCGTCCTCCCCTGCCGGGCTTTCGCCGTGTCCCAGT
CCTGGCTGGCTCTGTCGTCATGCTGGGAGCCCCCTCGTACCTCCCTGGAGCAGCTGGGAG
GCTGAATGCCCAGGGCTCTGGGAAGCTGTGGTGCCCCTTGGGTGGCTCTGCCAGCGTTGT
CCCCACTCCTGCTGGCCACCCCATCTTCCTCCAGGTCCGTGAGCCCCGCCTCTCCCTGCA
GGCCCTCCTCGCCGCCGCTCTCCTCGGTCTCCAAGGCCAGGCACCTGTAGCTCCCATCAG
GGATCGCGAAGGCGCAGGGGGTAGATGTGCCTTCGCTGGGCCCCAGGGGTGGAGAGGGGA
GGTGGGGGCCCAGCATGGTGCTGCCGCTGCTCAGGGACGCAGAGAAGCTGGTGCCGGGGC
TGGGGCGGGGCTGGAGCTGCCCGAGTGCGCCCTGGTCCCTGCTCTGCTCCGGGCCGTCTT
TGGCTCTCTGCAGCCCTGCCTTCCTCAGCCAGCTCACAGAGCTGGGGCGGCTCCAAGGCC
AAGACTTCCTGGGCTGGGCAGGGTGGGGGACCCCCAAGCCNTCTTCCTCACCCCGTCTCT
CGTCTGTCAGGCCTCTCTTTCGAGATGGTCTATCCTCCAAAGGACNNTCAATCTGGCTAC
TTCCTGGNCAGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCTGGGTGGGGTGGTGAGCTGGGCTGCGATCTGCCGGCTCCTCGCCTTGGCCTCTT
TGAGGTCCTTCTCGGTCAGGCTAGGGCTCCGGCCCAATTCTGGTTTCCAGGCAGCCCTGG
GCCCAGGGCTGGGGCTGAGGCTGGCCGTCCTCCCCTGCCGGGCTTTCGCCGTGTCCCAGT
CCTGGCTGGCTCTGTCGTCATGCTGGGAGCCCCCTCGTACCTCCCTGGAGCAGCTGGGAG
GCTGAATGCCCAGGGCTCTGGGAAGCTGTGGTGCCCCTTGGGTGGCTCTGCCAGCGTTGT
CCCCACTCCTGCTGGCCACCCCATCTTCCTCCAGGTCCGTGAGCCCCGCCTCTCCCTGCA
GGCCCTCCTCGCCGCCGCTCTCCTCGGTCTCCAAGGCCAGGCACCTGTAGCTCCCATCAG
GGATCGCGAAGGCGCAGGGGGTAGATGTGCCTTCGCTGGGCCCCAGGGGTGGAGAGGGGA
GGTGGGGGCCCAGCATGGTGCTGCCGCTGCTCAGGGACGCAGAGAAGCTGGTGCCGGGGC
TGGGGCGGGGCTGGAGCTGCCCGAGTGCGCCCTGGTCCCTGCTCTGCTCCGGGCCGTCTT
TGGCTCTCTGCAGCCCTGCCTTCCTCAGCCAGCTCACAGAGCTGGGGCGGCTCCAAGGCC
AAGACTTCCTGGGCTGGGCAGGGTGGGGGACCCCCAAGCCNTCTTCCTCACCCCGTCTCT
CGTCTGTCAGGCCTCTCTTTCGAGATGGTCTATCCTCCAAAGGACNNTCAATCTGGCTAC
TTCCTGGNCAGCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-412, - strand, RNAz p=0.814585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-412, - strand, RNAz p=0.814585

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               263-388, + strand, RNAmicro p=0.94488

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               263-388, + strand, RNAmicro p=0.94488

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL831818, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL831818, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-763, gnl|bosTau2|chr7 (39225890-39225223)
               

               
               100-763, gnl|Hg17|chr5 (149978522-149977845)
               

               
               100-763, gnl|Mm7|chr18 (61018891-61019533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-763, gnl|bosTau2|chr7 (39225890-39225223)
               

               
               100-763, gnl|Hg17|chr5 (149978522-149977845)
               

               
               100-763, gnl|Mm7|chr18 (61018891-61019533)

	100-763, gnl\|bosTau2\|chr7 (39225890-39225223)
	100-763, gnl\|Hg17\|chr5 (149978522-149977845)
	100-763, gnl\|Mm7\|chr18 (61018891-61019533)