Non-Coding RNA Search

Mixn-0011a14

Sequence:


               
               CGTGGATAAATTTTAAAAGAAAAAAATAATAGGAAGCAGAAAGCAGTAAGAAGGCAACTT
TCTAAAAAAAAAGCCAAATATTCTGCCGAGAGACTACAGGAGAATATGATTAACTAAATC
AATGTGGTTTTTGAACAACATCTTACAACTGGTCTAGAAGCACCTATACCAATCACAGAA
ACAAAGGGTCTCTCAGTTATGTCAAATTCTAATACAATCATATAAAGATTGTCAAAGACA
AATGTTTACCAATAAAAGCATAAAAGCATTTCAGGCTACAAAATAAATTTAATAATAACT
TTAAGTAAGAAAGAGGTAAACTTTATTAACCAAGTTTGTGTTGTGTTTAGACATGAGGTT
GAGCTGTAAATTAAACCTCATTTCTTTGAAGGGACAATTGTCTAGGGAGGGGTGTGTGTG
TGTGTGTGTGCATGCATGTATACACACTTCTAAGCTGTTAAGTGACATAATTTAGTCATT
TCTACTGAATAACATGTGATTAGCATTGATTTGACTGTATTCTATAACTCCAGAATGTTC
TTATTCATGCAGTGGAAGCTTTTTTTCTTCTTTCATTTTTTAAGTGCTATTTCTCATAAA
AACTGCCAGGGATTATTAGTGATTGGTTATCACAAGTTCACCTAGGTGTTTATAATTAGA
GGATATGATAAAAAAAAATATTTCTCAGGCAGAAATGTTGGATTTTTTTTTTTTCTAACA
TTCAGACTTAACATGGTATGTTTTCACTGTAAATTAGATCAAAATACAAAGCTCTCAGCT
AAGAATTTGATAAAGGGCAGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGATAAATTTTAAAAGAAAAAAATAATAGGAAGCAGAAAGCAGTAAGAAGGCAACTT
TCTAAAAAAAAAGCCAAATATTCTGCCGAGAGACTACAGGAGAATATGATTAACTAAATC
AATGTGGTTTTTGAACAACATCTTACAACTGGTCTAGAAGCACCTATACCAATCACAGAA
ACAAAGGGTCTCTCAGTTATGTCAAATTCTAATACAATCATATAAAGATTGTCAAAGACA
AATGTTTACCAATAAAAGCATAAAAGCATTTCAGGCTACAAAATAAATTTAATAATAACT
TTAAGTAAGAAAGAGGTAAACTTTATTAACCAAGTTTGTGTTGTGTTTAGACATGAGGTT
GAGCTGTAAATTAAACCTCATTTCTTTGAAGGGACAATTGTCTAGGGAGGGGTGTGTGTG
TGTGTGTGTGCATGCATGTATACACACTTCTAAGCTGTTAAGTGACATAATTTAGTCATT
TCTACTGAATAACATGTGATTAGCATTGATTTGACTGTATTCTATAACTCCAGAATGTTC
TTATTCATGCAGTGGAAGCTTTTTTTCTTCTTTCATTTTTTAAGTGCTATTTCTCATAAA
AACTGCCAGGGATTATTAGTGATTGGTTATCACAAGTTCACCTAGGTGTTTATAATTAGA
GGATATGATAAAAAAAAATATTTCTCAGGCAGAAATGTTGGATTTTTTTTTTTTCTAACA
TTCAGACTTAACATGGTATGTTTTCACTGTAAATTAGATCAAAATACAAAGCTCTCAGCT
AAGAATTTGATAAAGGGCAGCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-116, - strand, RNAz p=0.79482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-116, - strand, RNAz p=0.79482

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-166, gnl|bosTau2|chr6 (19921502-19921336)
               

               
               2-166, gnl|canFam2|chr3 (92079017-92078907)
               

               
               2-166, gnl|hg17|chr4 (19990902-19991011)
               

               
               2-166, gnl|Hg17|chr4 (19991485-19990902)
               

               
               2-166, gnl|mm7|chr5 (47371560-47371664)
               

               
               2-166, gnl|oryCun1|scaffold_175542 (7375-7476)
               

               
               2-166, gnl|panTro1|chr3 (20459992-20460103)
               

               
               2-166, gnl|rheMac2|chr5 (15095843-15095953)
               

               
               2-166, gnl|rn3|chr14 (67832796-67832692)
               


               
               169-401, gnl|bosTau2|chr6 (19921160-19920925)
               


               
               459-804, gnl|bosTau2|chr6 (19920800-19920453)
               

               
               459-804, gnl|Mm7|chr5 (47371362-47371035)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-166, gnl|bosTau2|chr6 (19921502-19921336)
               

               
               2-166, gnl|canFam2|chr3 (92079017-92078907)
               

               
               2-166, gnl|hg17|chr4 (19990902-19991011)
               

               
               2-166, gnl|Hg17|chr4 (19991485-19990902)
               

               
               2-166, gnl|mm7|chr5 (47371560-47371664)
               

               
               2-166, gnl|oryCun1|scaffold_175542 (7375-7476)
               

               
               2-166, gnl|panTro1|chr3 (20459992-20460103)
               

               
               2-166, gnl|rheMac2|chr5 (15095843-15095953)
               

               
               2-166, gnl|rn3|chr14 (67832796-67832692)
               


               
               169-401, gnl|bosTau2|chr6 (19921160-19920925)
               


               
               459-804, gnl|bosTau2|chr6 (19920800-19920453)
               

               
               459-804, gnl|Mm7|chr5 (47371362-47371035)

	2-166, gnl\|bosTau2\|chr6 (19921502-19921336)
	2-166, gnl\|canFam2\|chr3 (92079017-92078907)
	2-166, gnl\|hg17\|chr4 (19990902-19991011)
	2-166, gnl\|Hg17\|chr4 (19991485-19990902)
	2-166, gnl\|mm7\|chr5 (47371560-47371664)
	2-166, gnl\|oryCun1\|scaffold_175542 (7375-7476)
	2-166, gnl\|panTro1\|chr3 (20459992-20460103)
	2-166, gnl\|rheMac2\|chr5 (15095843-15095953)
	2-166, gnl\|rn3\|chr14 (67832796-67832692)

	169-401, gnl\|bosTau2\|chr6 (19921160-19920925)

	459-804, gnl\|bosTau2\|chr6 (19920800-19920453)
	459-804, gnl\|Mm7\|chr5 (47371362-47371035)