Non-Coding RNA Search

Mixn-0011k09

Sequence:


               
               GGTCTAAAGGCGACTTTGAGGGGGTTGGTGGGGAGGCAGTGATTTCCGAGCCCTAGGGTG
GCCTGCTGGAAAATGCTCCCAAGCTGTAGCACTGGGGCCTGAGACGTGGCCAGGACCCAT
TGCTAGAGGCAACGAGTATCATCCAGAAAGCAGCTCCCCCAAAGTAGCCTCCAGGAAAAA
GGAGAGTTGAGTGGCTAAGGACCTCCTTCCTTAGAGAGGACCTCACCCAAGGAGGAAGCG
GGGCATATGTGGGCAGGCAGCACAAGTGTACATGCGACCCCCATCTCCAGGGGGGGCTCC
AGACCCAGAGATTAGCCTCCCACTGTGGCAGAGAAAATAAAAGCCCTTTGTGGGCCTCTG
GCCTTTGTCTGCAAAGAGGGGGAGATTTGCAACTAGACACTTCTTGAAAGGAGACACTCA
GTTTCGCAAGTGAGCCCTCTCGCCCAGCACACACCTATGGCCGGCTGGGCAAGGCGCTCA
GGCAGGAAACCACAGGCACCAGCCAACACCCCTCCATCACCCATCCTACTGCCAGCCCAC
CTCCCCAGGCAGCAGCTCCTCCTCCCCTCCCTCCCGCACACCCCCAGCAGCTCCAGTGCT
CCCACCAGAAGATATTATTATGGAGAGAGTAGCCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTAAAGGCGACTTTGAGGGGGTTGGTGGGGAGGCAGTGATTTCCGAGCCCTAGGGTG
GCCTGCTGGAAAATGCTCCCAAGCTGTAGCACTGGGGCCTGAGACGTGGCCAGGACCCAT
TGCTAGAGGCAACGAGTATCATCCAGAAAGCAGCTCCCCCAAAGTAGCCTCCAGGAAAAA
GGAGAGTTGAGTGGCTAAGGACCTCCTTCCTTAGAGAGGACCTCACCCAAGGAGGAAGCG
GGGCATATGTGGGCAGGCAGCACAAGTGTACATGCGACCCCCATCTCCAGGGGGGGCTCC
AGACCCAGAGATTAGCCTCCCACTGTGGCAGAGAAAATAAAAGCCCTTTGTGGGCCTCTG
GCCTTTGTCTGCAAAGAGGGGGAGATTTGCAACTAGACACTTCTTGAAAGGAGACACTCA
GTTTCGCAAGTGAGCCCTCTCGCCCAGCACACACCTATGGCCGGCTGGGCAAGGCGCTCA
GGCAGGAAACCACAGGCACCAGCCAACACCCCTCCATCACCCATCCTACTGCCAGCCCAC
CTCCCCAGGCAGCAGCTCCTCCTCCCCTCCCTCCCGCACACCCCCAGCAGCTCCAGTGCT
CCCACCAGAAGATATTATTATGGAGAGAGTAGCCTAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               407-518, - strand, RNAz p=0.645383
               

               
               438-541, - strand, RNAz p=0.603896

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-518, - strand, RNAz p=0.645383
               

               
               438-541, - strand, RNAz p=0.603896

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               290-603, gnl|bosTau2|chr5 (24897367-24897057)
               

               
               290-603, gnl|canFam2|chr27 (7754517-7753688)
               

               
               290-603, gnl|dasNov1|scaffold_265 (1271-2164)
               

               
               290-603, gnl|echTel1|scaffold_297492 (12023-11129)
               

               
               290-603, gnl|hg17|chr12 (48636251-48637176)
               

               
               290-603, gnl|Hg17|chr12 (48636582-48636903)
               

               
               290-603, gnl|mm7|chr15 (99569813-99570630)
               

               
               290-603, gnl|Mm7|chr15 (99570096-99570392)
               

               
               290-603, gnl|oryCun1|scaffold_182377 (14425-13639)
               

               
               290-603, gnl|panTro1|chr10 (49819943-49820868)
               

               
               290-603, gnl|rheMac2|chr11 (47082358-47083198)
               

               
               290-603, gnl|rn3|chr7 (138407352-138408191)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               290-603, gnl|bosTau2|chr5 (24897367-24897057)
               

               
               290-603, gnl|canFam2|chr27 (7754517-7753688)
               

               
               290-603, gnl|dasNov1|scaffold_265 (1271-2164)
               

               
               290-603, gnl|echTel1|scaffold_297492 (12023-11129)
               

               
               290-603, gnl|hg17|chr12 (48636251-48637176)
               

               
               290-603, gnl|Hg17|chr12 (48636582-48636903)
               

               
               290-603, gnl|mm7|chr15 (99569813-99570630)
               

               
               290-603, gnl|Mm7|chr15 (99570096-99570392)
               

               
               290-603, gnl|oryCun1|scaffold_182377 (14425-13639)
               

               
               290-603, gnl|panTro1|chr10 (49819943-49820868)
               

               
               290-603, gnl|rheMac2|chr11 (47082358-47083198)
               

               
               290-603, gnl|rn3|chr7 (138407352-138408191)

	407-518, - strand, RNAz p=0.645383
	438-541, - strand, RNAz p=0.603896

	290-603, gnl\|bosTau2\|chr5 (24897367-24897057)
	290-603, gnl\|canFam2\|chr27 (7754517-7753688)
	290-603, gnl\|dasNov1\|scaffold_265 (1271-2164)
	290-603, gnl\|echTel1\|scaffold_297492 (12023-11129)
	290-603, gnl\|hg17\|chr12 (48636251-48637176)
	290-603, gnl\|Hg17\|chr12 (48636582-48636903)
	290-603, gnl\|mm7\|chr15 (99569813-99570630)
	290-603, gnl\|Mm7\|chr15 (99570096-99570392)
	290-603, gnl\|oryCun1\|scaffold_182377 (14425-13639)
	290-603, gnl\|panTro1\|chr10 (49819943-49820868)
	290-603, gnl\|rheMac2\|chr11 (47082358-47083198)
	290-603, gnl\|rn3\|chr7 (138407352-138408191)