Non-Coding RNA Search

Mixn-0011o24

Sequence:


               
               GGTAGGGCGATCGCTACAGTTTATGCTCCTCTGGAGCTTCGGAGCAAGATTTCCCAAAAA
GCCGTATTAAATAAATAAAAGGAAATTCAGCAGATGGAAGCATGAATCAATGAAAACTCC
CATATGAGTGCAAAGATTTATGTCAAAAAACAAAACATCAACATCTGGGAGCTGCCGCGT
CTCCTCTTGGCTGCTCGTTTGGAATGGATTCTCGGTGGCGCTTTCCGCCTCGTTCTGGCC
CTGGGAGAGGACAGAGAGAAAGAATGAAGCCCATTTAAAAAATAGTCATTTTTAATCAGA
AATGAACGCTGTTTCCTCCCCCCAGGCTGGAGGGAATGTGATCCAGGCTGCGGGGGCCCG
GGGATCGTGGAGAGACAGAGCCCCCTGCCGGACGCGGAGCGGTGCCCCGGCCTCCCCGCC
CCGGCGGCAGCGGCTCTCTGGGGTCGGGTCCCTCCAGATTTCCCAGCTGCCCAGGCCGGG
AGAGCGCGCCCACCCACCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGGGCGATCGCTACAGTTTATGCTCCTCTGGAGCTTCGGAGCAAGATTTCCCAAAAA
GCCGTATTAAATAAATAAAAGGAAATTCAGCAGATGGAAGCATGAATCAATGAAAACTCC
CATATGAGTGCAAAGATTTATGTCAAAAAACAAAACATCAACATCTGGGAGCTGCCGCGT
CTCCTCTTGGCTGCTCGTTTGGAATGGATTCTCGGTGGCGCTTTCCGCCTCGTTCTGGCC
CTGGGAGAGGACAGAGAGAAAGAATGAAGCCCATTTAAAAAATAGTCATTTTTAATCAGA
AATGAACGCTGTTTCCTCCCCCCAGGCTGGAGGGAATGTGATCCAGGCTGCGGGGGCCCG
GGGATCGTGGAGAGACAGAGCCCCCTGCCGGACGCGGAGCGGTGCCCCGGCCTCCCCGCC
CCGGCGGCAGCGGCTCTCTGGGGTCGGGTCCCTCCAGATTTCCCAGCTGCCCAGGCCGGG
AGAGCGCGCCCACCCACCGCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               40-197, - strand, RNAz p=0.986625
               

               
               66-184, - strand, RNAz p=0.999114
               

               
               238-327, - strand, RNAz p=0.95546

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-197, - strand, RNAz p=0.986625
               

               
               66-184, - strand, RNAz p=0.999114
               

               
               238-327, - strand, RNAz p=0.95546

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-476, gnl|bosTau2|chr7 (35859950-35859482)
               

               
               1-476, gnl|canFam2|chr2 (39703745-39704270)
               

               
               1-476, gnl|hg17|chr5 (141273598-141274087)
               

               
               1-476, gnl|Hg17|chr5 (141273608-141274092)
               

               
               1-476, gnl|loxAfr1|scaffold_25441 (44035-43560)
               

               
               1-476, gnl|mm7|chr18 (38615143-38615632)
               

               
               1-476, gnl|Mm7|chr18 (38615151-38615637)
               

               
               1-476, gnl|oryCun1|scaffold_172492 (23844-24311)
               

               
               1-476, gnl|panTro1|chr4 (147912569-147913060)
               

               
               1-476, gnl|rheMac2|chr6 (138322827-138323316)
               

               
               1-476, gnl|rn3|chr18 (31193927-31194412)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-476, gnl|bosTau2|chr7 (35859950-35859482)
               

               
               1-476, gnl|canFam2|chr2 (39703745-39704270)
               

               
               1-476, gnl|hg17|chr5 (141273598-141274087)
               

               
               1-476, gnl|Hg17|chr5 (141273608-141274092)
               

               
               1-476, gnl|loxAfr1|scaffold_25441 (44035-43560)
               

               
               1-476, gnl|mm7|chr18 (38615143-38615632)
               

               
               1-476, gnl|Mm7|chr18 (38615151-38615637)
               

               
               1-476, gnl|oryCun1|scaffold_172492 (23844-24311)
               

               
               1-476, gnl|panTro1|chr4 (147912569-147913060)
               

               
               1-476, gnl|rheMac2|chr6 (138322827-138323316)
               

               
               1-476, gnl|rn3|chr18 (31193927-31194412)

	40-197, - strand, RNAz p=0.986625
	66-184, - strand, RNAz p=0.999114
	238-327, - strand, RNAz p=0.95546

	1-476, gnl\|bosTau2\|chr7 (35859950-35859482)
	1-476, gnl\|canFam2\|chr2 (39703745-39704270)
	1-476, gnl\|hg17\|chr5 (141273598-141274087)
	1-476, gnl\|Hg17\|chr5 (141273608-141274092)
	1-476, gnl\|loxAfr1\|scaffold_25441 (44035-43560)
	1-476, gnl\|mm7\|chr18 (38615143-38615632)
	1-476, gnl\|Mm7\|chr18 (38615151-38615637)
	1-476, gnl\|oryCun1\|scaffold_172492 (23844-24311)
	1-476, gnl\|panTro1\|chr4 (147912569-147913060)
	1-476, gnl\|rheMac2\|chr6 (138322827-138323316)
	1-476, gnl\|rn3\|chr18 (31193927-31194412)