Mixn-0012c11
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TGGATTTGTTTCTGCCGAGCCGCAACAGGAACGCCCCAGAAGGACTTTCTAATGGGATGA
AGGGACAGAGCTCTTGAAAGGAATCCTGGAACTTGGGTACCGCTTCTACCTTTTGGAAAT
TAGAGCCTCCGTGTCAAGGAGGCCTTACCCGGGCTCATCTGGGACCTGGGCCAGCAGCTG
GGAGACCTGAGCCTGGAGTCTGGGGGCCTGGAGCAGGAGAGCGGGCGCAGCTCAGGCTTC
TATGAAGACCCCAGCTCCACAGGAGGTCCAGACTCACCACCTTCGACCTTCTGTGGGGAC
AGTGGCTTCTCCGGATCTGGCTCCTATGGACGCCTGGGTCCCTCTGAACCCCGGGGCATC
TATGCCAGTGAGAGGCCCAAGTCTCTAGGAGACGCCAGTCCCAGCGCACCCGAGGCGGTG
GGCCCTCGGGCGGCCGTGCCGCGGTCCTTCTCGGCGCCCTACCCATCGGCAGCGGGGTCT
GCGGGCCCGGAGGCCTGCTCCTCCGCCGAGCGGCGGGCCCGCGCGGGGCCTTTCCTGACG
CCCAGCCCCCTGCACGCCGTGGCCCTGCGCAGCCCGCGGCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TGGATTTGTTTCTGCCGAGCCGCAACAGGAACGCCCCAGAAGGACTTTCTAATGGGATGA
AGGGACAGAGCTCTTGAAAGGAATCCTGGAACTTGGGTACCGCTTCTACCTTTTGGAAAT
TAGAGCCTCCGTGTCAAGGAGGCCTTACCCGGGCTCATCTGGGACCTGGGCCAGCAGCTG
GGAGACCTGAGCCTGGAGTCTGGGGGCCTGGAGCAGGAGAGCGGGCGCAGCTCAGGCTTC
TATGAAGACCCCAGCTCCACAGGAGGTCCAGACTCACCACCTTCGACCTTCTGTGGGGAC
AGTGGCTTCTCCGGATCTGGCTCCTATGGACGCCTGGGTCCCTCTGAACCCCGGGGCATC
TATGCCAGTGAGAGGCCCAAGTCTCTAGGAGACGCCAGTCCCAGCGCACCCGAGGCGGTG
GGCCCTCGGGCGGCCGTGCCGCGGTCCTTCTCGGCGCCCTACCCATCGGCAGCGGGGTCT
GCGGGCCCGGAGGCCTGCTCCTCCGCCGAGCGGCGGGCCCGCGCGGGGCCTTTCCTGACG
CCCAGCCCCCTGCACGCCGTGGCCCTGCGCAGCCCGCGGCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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239-385, - strand, RNAmicro p=0.999978 |
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247-387, + strand, RNAmicro p=0.990448 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
239-385, - strand, RNAmicro p=0.999978 |
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247-387, + strand, RNAmicro p=0.990448 |
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234-344, CJ055028 RIKEN full-length enriched mouse cDNA library, C57BL/6J
(dbj|CJ055028.1|), blast E-value=1e-35, identity=92.79% |
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234-344, CJ055166 RIKEN full-length enriched mouse cDNA library, C57BL/6J
(dbj|CJ055166.1|), blast E-value=1e-35, identity=92.79% |
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234-352, LIB4003-007-Q6-K1-H1 LIB4003 Canis familiaris cDNA clone
(gb|DN398190.1|), blast E-value=0, identity=97.48% |
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235-352, LB00494.CR_J01 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT852054.1|),
blast E-value=3.00018e-42, identity=94.07% |
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235-352, LB0218.CR_G16 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE237590.1|),
blast E-value=9.80909e-45, identity=94.92% |
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235-352, EST020 adult bovine testicles Bos taurus cDNA clone UNKN004 3'end,
(gb|T25687.1|), blast E-value=7e-37, identity=92.5% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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234-344, CJ055028 RIKEN full-length enriched mouse cDNA library, C57BL/6J
(dbj|CJ055028.1|), blast E-value=1e-35, identity=92.79% |
|
234-344, CJ055166 RIKEN full-length enriched mouse cDNA library, C57BL/6J
(dbj|CJ055166.1|), blast E-value=1e-35, identity=92.79% |
|
234-352, LIB4003-007-Q6-K1-H1 LIB4003 Canis familiaris cDNA clone
(gb|DN398190.1|), blast E-value=0, identity=97.48% |
|
235-352, LB00494.CR_J01 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT852054.1|),
blast E-value=3.00018e-42, identity=94.07% |
|
235-352, LB0218.CR_G16 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE237590.1|),
blast E-value=9.80909e-45, identity=94.92% |
|
235-352, EST020 adult bovine testicles Bos taurus cDNA clone UNKN004 3'end,
(gb|T25687.1|), blast E-value=7e-37, identity=92.5% |
Human gene identifier and UTR site,
human gene reading direction
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234-389, gnl|bosTau2|chr18 (49773522-49773677) |
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234-389, gnl|canFam2|chr1 (112140547-112140325) |
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234-389, gnl|dasNov1|scaffold_58828 (6818-6596) |
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234-389, gnl|hg17|chr19 (51847709-51847931) |
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234-389, gnl|Hg17|chr19 (51847911-51847756) |
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234-389, gnl|loxAfr1|scaffold_78071 (5086-5309) |
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234-389, gnl|mm7|chr7 (14647357-14647149) |
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234-389, gnl|Mm7|chr7 (14647167-14647322) |
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234-389, gnl|monDom2|scaffold_149 (1852728-1852511) |
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234-389, gnl|oryCun1|scaffold_189176 (349-559) |
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234-389, gnl|panTro1|chr20 (49143787-49144009) |
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234-389, gnl|rheMac2|chr19 (52993046-52993266) |
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234-389, gnl|rn3|chr1 (77288137-77287920) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
234-389, gnl|bosTau2|chr18 (49773522-49773677) |
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234-389, gnl|canFam2|chr1 (112140547-112140325) |
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234-389, gnl|dasNov1|scaffold_58828 (6818-6596) |
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234-389, gnl|hg17|chr19 (51847709-51847931) |
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234-389, gnl|Hg17|chr19 (51847911-51847756) |
|
234-389, gnl|loxAfr1|scaffold_78071 (5086-5309) |
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234-389, gnl|mm7|chr7 (14647357-14647149) |
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234-389, gnl|Mm7|chr7 (14647167-14647322) |
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234-389, gnl|monDom2|scaffold_149 (1852728-1852511) |
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234-389, gnl|oryCun1|scaffold_189176 (349-559) |
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234-389, gnl|panTro1|chr20 (49143787-49144009) |
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234-389, gnl|rheMac2|chr19 (52993046-52993266) |
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234-389, gnl|rn3|chr1 (77288137-77287920) |
