Non-Coding RNA Search

Mixn-0012l07

Sequence:


               
               GAATTTATAAATCCTTCCGGAATACGTCCAGTCATCCTCTCTGAACTTTTGAGCTTTATC
TGCTTTCCGAAAAGCCCCTAGATACAGGCCCGGCTATAGAGGCCAAGGCGGAGGGTCCAG
CTCTGGGTGGGGGTAGGGGAGATCCCTACGCCTGAGGTCTGGATCTGCTAGGTCGCTGGG
CGTCAGCGTGCCCGCCAGCCCGCCACGCGCCAGCGTGCTTCCCAGTCCTGATTCCCCGCG
CTGCTGCCTGCCAGTAGAAGGAGGAGCAGCGCTATTTTTAACCTCCCCGGCTGCAATCCC
TTATATATATTTGCAGGAAGGAAATCAGTAAAGGATTAAGAAGGAAATGCTTGGACTAAG
TTTTTCTCGAGAAGGACGGGGTTGGATGGGGGGGGGTATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTTATAAATCCTTCCGGAATACGTCCAGTCATCCTCTCTGAACTTTTGAGCTTTATC
TGCTTTCCGAAAAGCCCCTAGATACAGGCCCGGCTATAGAGGCCAAGGCGGAGGGTCCAG
CTCTGGGTGGGGGTAGGGGAGATCCCTACGCCTGAGGTCTGGATCTGCTAGGTCGCTGGG
CGTCAGCGTGCCCGCCAGCCCGCCACGCGCCAGCGTGCTTCCCAGTCCTGATTCCCCGCG
CTGCTGCCTGCCAGTAGAAGGAGGAGCAGCGCTATTTTTAACCTCCCCGGCTGCAATCCC
TTATATATATTTGCAGGAAGGAAATCAGTAAAGGATTAAGAAGGAAATGCTTGGACTAAG
TTTTTCTCGAGAAGGACGGGGTTGGATGGGGGGGGGTATGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-401, + strand, RNAz p=0.755073

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-401, + strand, RNAz p=0.755073

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-401, gnl|bosTau2|chr2 (56135874-56135490)
               

               
               1-401, gnl|canFam2|chr37 (17995473-17996167)
               

               
               1-401, gnl|dasNov1|scaffold_66605 (10722-10006)
               

               
               1-401, gnl|echTel1|scaffold_310546 (207-769)
               

               
               1-401, gnl|hg17|chr2 (207132675-207133339)
               

               
               1-401, gnl|Hg17|chr2 (207132990-207133352)
               

               
               1-401, gnl|loxAfr1|scaffold_2278 (87111-87773)
               

               
               1-401, gnl|mm7|chr1 (63685563-63686159)
               

               
               1-401, gnl|monDom2|scaffold_39 (16913629-16912729)
               

               
               1-401, gnl|oryCun1|scaffold_212373 (94061-93406)
               

               
               1-401, gnl|panTro1|chr13 (97164628-97165292)
               

               
               1-401, gnl|rheMac2|chr12 (70337268-70337929)
               

               
               1-401, gnl|rn3|chr9 (62252025-62252631)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr2 (56135874-56135490)
               

               
               1-401, gnl|canFam2|chr37 (17995473-17996167)
               

               
               1-401, gnl|dasNov1|scaffold_66605 (10722-10006)
               

               
               1-401, gnl|echTel1|scaffold_310546 (207-769)
               

               
               1-401, gnl|hg17|chr2 (207132675-207133339)
               

               
               1-401, gnl|Hg17|chr2 (207132990-207133352)
               

               
               1-401, gnl|loxAfr1|scaffold_2278 (87111-87773)
               

               
               1-401, gnl|mm7|chr1 (63685563-63686159)
               

               
               1-401, gnl|monDom2|scaffold_39 (16913629-16912729)
               

               
               1-401, gnl|oryCun1|scaffold_212373 (94061-93406)
               

               
               1-401, gnl|panTro1|chr13 (97164628-97165292)
               

               
               1-401, gnl|rheMac2|chr12 (70337268-70337929)
               

               
               1-401, gnl|rn3|chr9 (62252025-62252631)

	1-401, gnl\|bosTau2\|chr2 (56135874-56135490)
	1-401, gnl\|canFam2\|chr37 (17995473-17996167)
	1-401, gnl\|dasNov1\|scaffold_66605 (10722-10006)
	1-401, gnl\|echTel1\|scaffold_310546 (207-769)
	1-401, gnl\|hg17\|chr2 (207132675-207133339)
	1-401, gnl\|Hg17\|chr2 (207132990-207133352)
	1-401, gnl\|loxAfr1\|scaffold_2278 (87111-87773)
	1-401, gnl\|mm7\|chr1 (63685563-63686159)
	1-401, gnl\|monDom2\|scaffold_39 (16913629-16912729)
	1-401, gnl\|oryCun1\|scaffold_212373 (94061-93406)
	1-401, gnl\|panTro1\|chr13 (97164628-97165292)
	1-401, gnl\|rheMac2\|chr12 (70337268-70337929)
	1-401, gnl\|rn3\|chr9 (62252025-62252631)