Non-Coding RNA Search

Mixn-0013h19

Sequence:


               
               CCAACTTTAAAAAAAATATATATATATATTTTTTCCAGAGCTGAAGACACACACACCCTG
AAGGGCCCGGAGCCACTGCTGACCAGCGTGTAAATCTCCCAAGTGCCGATGTCTAAGGGC
AGTGCTGGCTCAACCGCAGCAACCCCGGGTGCCGCCCCGGCCGGACTCCCCACCCAGCAG
CGGAGTCTGGGACCCCGGGGGCGAGCCTGAATTGTGGAGGTTTAGGTTCCCTCCTCTGAC
CCCCAGCCTGGCTCCTGGCTCACGTCTGGGCCTCCGTGAGTCCGTGGGGGCCGCCCCACC
TCTCTCTGTCTCCCCGTGTCCTCAGCTGTCCAGGGCCTGTGCCTTCAGGGGAGCGCATGG
CCAACGTCCTCGAGTCGCCTTGCCTGCAGGTTCTCGATCTCGATGGTCTTCTCTCGCTCC
ATCTTGCACAGCAGCTCCTTCTGCCTGCGCGTCTCCTCCAGAACCATCTCGCAGGCTCGC
AGCTCCTGCTCCTTGAGCTGCTCCTCCAGGGCGTTGGCTCTGTGAGGCAGAGGAGAGGGC
GGGACCAGCCTGAGACGCTGCGCCCAGACCAGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACTTTAAAAAAAATATATATATATATTTTTTCCAGAGCTGAAGACACACACACCCTG
AAGGGCCCGGAGCCACTGCTGACCAGCGTGTAAATCTCCCAAGTGCCGATGTCTAAGGGC
AGTGCTGGCTCAACCGCAGCAACCCCGGGTGCCGCCCCGGCCGGACTCCCCACCCAGCAG
CGGAGTCTGGGACCCCGGGGGCGAGCCTGAATTGTGGAGGTTTAGGTTCCCTCCTCTGAC
CCCCAGCCTGGCTCCTGGCTCACGTCTGGGCCTCCGTGAGTCCGTGGGGGCCGCCCCACC
TCTCTCTGTCTCCCCGTGTCCTCAGCTGTCCAGGGCCTGTGCCTTCAGGGGAGCGCATGG
CCAACGTCCTCGAGTCGCCTTGCCTGCAGGTTCTCGATCTCGATGGTCTTCTCTCGCTCC
ATCTTGCACAGCAGCTCCTTCTGCCTGCGCGTCTCCTCCAGAACCATCTCGCAGGCTCGC
AGCTCCTGCTCCTTGAGCTGCTCCTCCAGGGCGTTGGCTCTGTGAGGCAGAGGAGAGGGC
GGGACCAGCCTGAGACGCTGCGCCCAGACCAGGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-535, - strand, RNAz p=0.955106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-535, - strand, RNAz p=0.955106

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               484-545, + strand, RNAmicro p=0.925194

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               484-545, + strand, RNAmicro p=0.925194

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               378-576, gnl|bosTau2|chr25 (1352985-1353179)
               

               
               378-576, gnl|Hg17|chr16 (500802-500590)
               

               
               378-576, gnl|Mm7|chr17 (24177425-24177584)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               378-576, gnl|bosTau2|chr25 (1352985-1353179)
               

               
               378-576, gnl|Hg17|chr16 (500802-500590)
               

               
               378-576, gnl|Mm7|chr17 (24177425-24177584)

	378-576, gnl\|bosTau2\|chr25 (1352985-1353179)
	378-576, gnl\|Hg17\|chr16 (500802-500590)
	378-576, gnl\|Mm7\|chr17 (24177425-24177584)