Non-Coding RNA Search

Mixn-0014o08

Sequence:


               
               GAGCTAAAAATTCTTTCCCATTGTTTTATTTTTAAGCTCTATTTTATGTTTCTGCCAGGA
TGAAAACGTTCATTCCCTTTTGGGTTCTGATGGCCTGGTAAAACTTCTTTGTAAACCCAG
GGGAGGTGATAGAACTGGCACAGGAGGAAAATTAATGTGGTCGGGATCCTGAATGGAATG
GGGGTGATGTGCAGGGCTTGCAGAGTCTATTGTCATCAATCACGGCAGAGGTTCTATGGA
GATGCTGGGCTGCAAGATCAAGATACCTTCCTTCCAGAAGAACCCTGCTCTTGCGCAATA
GAGAAAAGCATAAGCACAGAAATAGAATATGTGTGTAATTATAGGCCACATCTACACACT
TTCATTAACATTGCTTGGCATCTATTCCTGTGTATGTGCATTTTTCTGGAAAAAAAGTTA
AATGGGGTTTTCCATAACTCTTTTTTTAAAAGCGTTGTAGGATATTTTCCGACCCCATAT
TTTTCCAGTAACTTAAGCTCAAAGCTCATAGCACTGAAGCCCTTTCTTGTCGAAGGTGAG
TCAAAAACAGGAACCTTTTAATTCTGTCACATGATGTTGGATGTTATAAAATAGTCATAG
CAATGAGTTGTCCCCCCCCCACTTGTCAGACTTTTAGCGACTTGCCTTTGTTCACATTGC
TGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTAAAAATTCTTTCCCATTGTTTTATTTTTAAGCTCTATTTTATGTTTCTGCCAGGA
TGAAAACGTTCATTCCCTTTTGGGTTCTGATGGCCTGGTAAAACTTCTTTGTAAACCCAG
GGGAGGTGATAGAACTGGCACAGGAGGAAAATTAATGTGGTCGGGATCCTGAATGGAATG
GGGGTGATGTGCAGGGCTTGCAGAGTCTATTGTCATCAATCACGGCAGAGGTTCTATGGA
GATGCTGGGCTGCAAGATCAAGATACCTTCCTTCCAGAAGAACCCTGCTCTTGCGCAATA
GAGAAAAGCATAAGCACAGAAATAGAATATGTGTGTAATTATAGGCCACATCTACACACT
TTCATTAACATTGCTTGGCATCTATTCCTGTGTATGTGCATTTTTCTGGAAAAAAAGTTA
AATGGGGTTTTCCATAACTCTTTTTTTAAAAGCGTTGTAGGATATTTTCCGACCCCATAT
TTTTCCAGTAACTTAAGCTCAAAGCTCATAGCACTGAAGCCCTTTCTTGTCGAAGGTGAG
TCAAAAACAGGAACCTTTTAATTCTGTCACATGATGTTGGATGTTATAAAATAGTCATAG
CAATGAGTTGTCCCCCCCCCACTTGTCAGACTTTTAGCGACTTGCCTTTGTTCACATTGC
TGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-118, - strand, RNAz p=0.70884
               

               
               403-508, - strand, RNAz p=0.999906

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.70884
               

               
               403-508, - strand, RNAz p=0.999906

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-253, gnl|bosTau2|chr22 (25232167-25232420)
               

               
               1-253, gnl|canFam2|chr20 (24991715-24991484)
               

               
               1-253, gnl|dasNov1|scaffold_1548 (61222-60997)
               

               
               1-253, gnl|echTel1|scaffold_323241 (69992-69776)
               

               
               1-253, gnl|hg17|chr3 (69952310-69952531)
               

               
               1-253, gnl|Hg17|chr3 (69952358-69952603)
               

               
               1-253, gnl|loxAfr1|scaffold_475 (81623-81850)
               

               
               1-253, gnl|mm7|chr6 (97970951-97971177)
               

               
               1-253, gnl|Mm7|chr6 (97970999-97971251)
               

               
               1-253, gnl|monDom2|scaffold_5 (17225197-17225426)
               

               
               1-253, gnl|oryCun1|scaffold_214924 (212686-212460)
               

               
               1-253, gnl|panTro1|chr2 (71762281-71762501)
               

               
               1-253, gnl|rheMac2|chr2 (66346434-66346212)
               

               
               1-253, gnl|rn3|chr4 (132856978-132857205)
               


               
               259-659, gnl|bosTau2|chr22 (25232451-25232858)
               

               
               259-659, gnl|Hg17|chr3 (69952635-69953052)
               

               
               259-659, gnl|Mm7|chr6 (97971283-97971686)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr22 (25232167-25232420)
               

               
               1-253, gnl|canFam2|chr20 (24991715-24991484)
               

               
               1-253, gnl|dasNov1|scaffold_1548 (61222-60997)
               

               
               1-253, gnl|echTel1|scaffold_323241 (69992-69776)
               

               
               1-253, gnl|hg17|chr3 (69952310-69952531)
               

               
               1-253, gnl|Hg17|chr3 (69952358-69952603)
               

               
               1-253, gnl|loxAfr1|scaffold_475 (81623-81850)
               

               
               1-253, gnl|mm7|chr6 (97970951-97971177)
               

               
               1-253, gnl|Mm7|chr6 (97970999-97971251)
               

               
               1-253, gnl|monDom2|scaffold_5 (17225197-17225426)
               

               
               1-253, gnl|oryCun1|scaffold_214924 (212686-212460)
               

               
               1-253, gnl|panTro1|chr2 (71762281-71762501)
               

               
               1-253, gnl|rheMac2|chr2 (66346434-66346212)
               

               
               1-253, gnl|rn3|chr4 (132856978-132857205)
               


               
               259-659, gnl|bosTau2|chr22 (25232451-25232858)
               

               
               259-659, gnl|Hg17|chr3 (69952635-69953052)
               

               
               259-659, gnl|Mm7|chr6 (97971283-97971686)

	1-118, - strand, RNAz p=0.70884
	403-508, - strand, RNAz p=0.999906

	1-253, gnl\|bosTau2\|chr22 (25232167-25232420)
	1-253, gnl\|canFam2\|chr20 (24991715-24991484)
	1-253, gnl\|dasNov1\|scaffold_1548 (61222-60997)
	1-253, gnl\|echTel1\|scaffold_323241 (69992-69776)
	1-253, gnl\|hg17\|chr3 (69952310-69952531)
	1-253, gnl\|Hg17\|chr3 (69952358-69952603)
	1-253, gnl\|loxAfr1\|scaffold_475 (81623-81850)
	1-253, gnl\|mm7\|chr6 (97970951-97971177)
	1-253, gnl\|Mm7\|chr6 (97970999-97971251)
	1-253, gnl\|monDom2\|scaffold_5 (17225197-17225426)
	1-253, gnl\|oryCun1\|scaffold_214924 (212686-212460)
	1-253, gnl\|panTro1\|chr2 (71762281-71762501)
	1-253, gnl\|rheMac2\|chr2 (66346434-66346212)
	1-253, gnl\|rn3\|chr4 (132856978-132857205)

	259-659, gnl\|bosTau2\|chr22 (25232451-25232858)
	259-659, gnl\|Hg17\|chr3 (69952635-69953052)
	259-659, gnl\|Mm7\|chr6 (97971283-97971686)